Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCAGCGCAAGGTGCTCGGCCGCAGCGAGGCAGAAGCCTCCAAAAAAGGCCTGGCCCTGCTCGATCGCGTCGGCCTCAGCGCGCATGCCAAGAAACACCCC GGCCAGCTTTCCGGCGGCCAGCAGCAACGGGTGGCGATCGCCCGCGCCCTGGCCATGGACCCAATCGTCATGCTGTTCGACGAACCCACCTCGGCACTGG ACCCGGAAATGGTCAGTGAAGTGCTCGATGTGATGGTTCAGCTGGCCAACGAGGGCATGACCATGATGTGCGTGACCCACGAGATGGGCTTTGCCCGCAA GGTCGCCAACCGGGTCATCTTCATGGACAAAGGCAGCATCATCGAAGACTGCACCAAAGAAGAGTTCTTCGGCGACCAGAACGCCCGCGACCAACGCACC CAGCACTTCCTCAGCAAGATCCTGCAACACTAAGCCGGCCTCAGCCTCCGCTGCCCGCCCCCATCGGGCAGCGGACGCTGGTCGTGACAAGGCCACTGTG
|
|
DNA Sequence for Gene |
>D886_RS0112055
ATGAAATGCGATCCTTCGCTTCTTCTCCCTGCCAGACCTGCCGTGAATTCCCGCCTGATTCGTCAATTGCTGTTACCCCCCCTGATCATCCTGCTGATGG TCGGCCTCGGTATGGCCGGTTACCTGGTCAGCGAGAGCAATGGCATCCGCAGCCTGAGCGAAAACGGCGAGCGTCAGCTGGAGCTGCACGCGCGCACGGT CGAGAGCGAGATCAGCAAATACACCTACCTGCCCAGCCTGCTGGAGCTTGAAGACAGCGTCTCGCACCTGCTCACCGAGCCCGATGGCGGCTCCCGCCAG GCGGTCAACGAATACCTCGAAGGCTTGAACCGGCGCAGCCGCAGCCGGGCAATCTTCGTGCTCGACACCAACGGCCGGGTGCAGGCCACCAGCAACTGGC GCGATGCCGATTCGTTTCTGGGTGAAGACCTGTCGTTCCGGGCCTACTTCCAGACTGCCGTGCGCGGCGAACCCGGGCGCTTCTATGGCATCGGCAGCAC CACCGGCGAGGCCGGCTACTACTTGGCCCATGGCCTGGAAGAACACGGCAAGATCATAGGCGTAGCGGTGATCAAGGTACGCCTGGACACCCTCGAAGAA CGTTGGCAGCGTGCCCGCCTGGAAGCGTTCGTCAGCGATGAGAACGGCATCATCATTCTGTCCAGTGACCCGGCCCGGCGCTTGAAGTCGGTGCGCCCGC TGACCCCGCAAATCAAGGAACGCCTGGCGCGTAGCCTGCAGTATTACTGGTGGCCGCTGAACGAGCTGCAACCTCTGGCGCGGGAAACCCTCGCCGATGG TGTTGAAAAGCTGACCTTCCCGGCCAACAGCGAAACAGCGCAAGGCAAGGCCCATGAAGTGGCCTACCTGGCCCAGACCCGTCGCCTGGTCGACACCCCG TGGCATTTCACCCTGCTGACCCCGCTGCAAGACCTGCGCCGAGAATCGATGGTGCAAGGCATCCTGGTCGGGGTGGCATTCGCCCTGCTGGCCATCCTGG GCATCGCCTGGAACGAACGCCGCAAGGTCATCGCCACCCGCCTGGCCGCCCGCGAGGCGCTGCAGGAAGCCAACAGCCAACTCGAACGCCGCATCACCGA ACGCACCGCCGACTTGCGCGCCAGCAATGAGCGGCTGAAGGGGCAGATCCGCGAGCGCCGGCACGCCGAGCAAACCCTGCGCCATGCCCAGGATGAGCTG GTGCAGGCGGGCAAGCTGGCTGCCATTGGGCAGATGTCGACCAGCATCGCCCACGAACTCAACCAGCCGCTGGCCGCGCTGCGCACGTTGTCCGGCAACA CTGTGCGCTTCCTCGAACGCGGCGCGCTGGAAACGGCCAGCACCAACCTGCGTACCATGAACGACCTGATCGACCGCATGGGCCGTATCACCGCCAGCCT GCGTTCATTCGCCCGCCGTGGCGACGACGGTGGCCAGGCCTCGCTGGCCAAGGCGGTGGACGCCACCCTGCAAGTACTGGCCAACCGCATCAGTGGCTGC CACTTGCAATTGCACAACCAGTTCGAAGACCATCAACTGGCCATCGACCAGACCCGCCTGGAGCAGATCCTGGTCAACCTGATCGGCAACGCCATCGACG CCATGGCCACCCAGCCCCTGCCAGAGCTGTGGCTCGAAGGCGAACTGCAGGGTGACAAGTATCGCCTGCGGGTACGCGACAACGGCCATGGCATCGACGC CGAGGCACGCAAGCATTTGTTTGAACCCTTCTTCACCACCAAACCGGGCGAACATGGCCTGGGCCTGGGCCTGACCTTGTCGGCGAGCCTTGCCGCCGCC GCCAAAGGCAGCCTGAACGTCGAGCATCCTGTCAGTGGCGGCACGGCCTTCGTGCTTGTCCTACCCCTGGTATCCCCCCCTAGCGAATCGGCAGAGCACC CATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
ACCAAGCGCCTCTCACCGTCCTGATTGTCGAAGACGACCCGCATGTGCTGCTCGGCTGCCAGCAGGCATTGGCCCTGGAAGACATCGCCTGCGAAGGGGT CGGCAGCGCCGAACAGGCCCTGGAACGCATCGGCGACGACTTTGCCGGCATCGTCGTCAGCGACATTCGCCTGCCCGGCATCGATGGCCTTGAGCTGCTC AACCGCCTCAAGGCCCGCGACCGCAGCCTGCCGGTGGTGCTGATCACCGGCCATGGCGATATCGACATGGCGGTCGGCGCCATGCGCAACGGCGCCTACG ATTTCATGGAAAAGCCCTTCTCCCCCGAGCGCCTGGTCGACGTGGTGCGCCGCGCCCTCGAACAGCGCGGCCTGTCCCGCGAGGTGGTTGCCTTGCGCCG CCAACTGGCCGAACAGAGCAGCCTGGAGGGCCGCATCATTGGCCGCTCGCCGGCCATGGAGCACCTGCGTGAACTGATCGCCAACGTCGCCGACACCTCG
|
|
Amino Acid Sequence |
>histidine kinase
MKCDPSLLLPARPAVNSRLIRQLLLPPLIILLMVGLGMAGYLVSESNGIRSLSENGERQLELHARTVESEISKYTYLPSLLELEDSVSHLLTEPDGGSRQ AVNEYLEGLNRRSRSRAIFVLDTNGRVQATSNWRDADSFLGEDLSFRAYFQTAVRGEPGRFYGIGSTTGEAGYYLAHGLEEHGKIIGVAVIKVRLDTLEE RWQRARLEAFVSDENGIIILSSDPARRLKSVRPLTPQIKERLARSLQYYWWPLNELQPLARETLADGVEKLTFPANSETAQGKAHEVAYLAQTRRLVDTP WHFTLLTPLQDLRRESMVQGILVGVAFALLAILGIAWNERRKVIATRLAAREALQEANSQLERRITERTADLRASNERLKGQIRERRHAEQTLRHAQDEL VQAGKLAAIGQMSTSIAHELNQPLAALRTLSGNTVRFLERGALETASTNLRTMNDLIDRMGRITASLRSFARRGDDGGQASLAKAVDATLQVLANRISGC HLQLHNQFEDHQLAIDQTRLEQILVNLIGNAIDAMATQPLPELWLEGELQGDKYRLRVRDNGHGIDAEARKHLFEPFFTTKPGEHGLGLGLTLSASLAAA AKGSLNVEHPVSGGTAFVLVLPLVSPPSESAEHP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|