Pseudomonas sp. LAIL14HWK12:I7, D886_RS0111590
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACACGGCCGGGATGAACGCCAAGAGCGCCAGCTATGTGATGACGGGGGCGCTGTTCCTGTTCATGATCCTGCAGCCGTTCTTCGGCATGCTGTCCGACCG TATCGGCCGGCGTAACTCGATGCTGCTGTTCGGCGCCTTGGGCACGCTGTTCACCGTGCCCCTGTTGATGGCGCTGAAGACCGTGACCAGCCCGTTCCTG GCGTTCGTGCTGATCAGCCTGGCCTTGTGTATCGTCAGTTTCTACACCTCGATCAGCGGCCTGGTAAAAGCGGAGATGTTCCCGCCGCAGGTGCGCGCAC TGGGTGTGGGCCTTGCGTATGCGGTGGCCAACGCCATGTTCGGCGGGTCTGCTGAATACGTGGCCTTGGGCCTGAAGACCCTGGGCATGGAAAACACCTT CTACTGGTACGTGACGGCCATGATGGCGGTGGCTTTCTTGTTCAGCCTGCGCCTGCCGAAGCAGGCGGCGTACCTGCACCATGACGATTAAGGACCTGCA
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| DNA Sequence for Gene |
>D886_RS0111590
ATGACGTACCGTGCGGACAACCAGCTGTTCGATGCCTACTTCACCGCGCCGGCCATGCGCGAGATTTTCTCCGACCGTGGCCGCCTGCAGGGCATGCTCG ATTTCGAAGCCGCCCTGGCCCGCGCCGAAGCGGCCGCCGGGCTGGTGCCGCACAGTGCGGTGGCGGCCATCGAGGCGGCCTGTAAGGCAGAGCGTTACGA CGCTGGCGCCCTGGCCGATGCCATTGCCAGTGCCGGCAACTCGGCGATCCCGTTGGTGAAGGCGCTGGGCAAAGTGATCGCCAGCGGCGTGCCCGAGGCC GAGCGCTACGTGCACCTGGGCGCCACCAGCCAGGACGCCATGGACACCGGGCTGGTACTGCAACTGCGCGATGCCCTCGACCTGATCGAGGCAGACCTCG CTCAACTGGCCGATACCCTGGCGCGCCAGGCCTTGCACCATGCCGACACCCCGATGGTGGGGCGTACCTGGCTGCAACACGCCACGCCGGTCACCTTGGG CATGAAGCTGGCCGGTGTGCTGGGCGCGCTGACCCGTCATCGCCAGCGGCTTCAGGAGCTGCGCCCGCGCCTGCTGTGCCTGCAGTTCGGTGGTGCGTCC GGCAGCCTGGCAGCGTTGGGCAGCAAAGCCATGCCGGTGGCCGAGGGCCTGGCCGAGCAGCTCAAGCTGCACTTGCCCGAGCAACCCTGGCACACCCAGC GCGACCGGCTGGTGGAGTTTGCCTCGGTGCTGGGCCTGATCGCCGGTAGCCTCGGCAAGTTTGGCCGCGATGTCAGCCTGCTGATGCAGACCGAGGCGGG GGAGGTGTTCGAGCCTTCCGCGCCAGGCAAGGGTGGTTCGTCGACCATGCCGCACAAACGCAACCCGGTGGGTGCCGCCGTGCTGATCGGTGCCGCTACC CGCGTGCCGGGCCTGTTGTCGACCTTGTTCGCCGCCATGCCTCAAGAACATGAACGCAGCCTTGGCCTGTGGCATGCCGAGTGGGAAACCCTGCCGGATA TCTGCTGCCTGGTTTCCGGCGCCCTGCGCCAGGCCCAGGTGATTGCCGAAGGCATGCAGGTCGATGCCGAACGTATGCGCCGCAACCTCGACCTGACCCA GGGGCTGGTGCTGGCCGAGGCGGTCAGCATTGTCCTGGCTCAGCGCCTGGGCCGTGACCGTGCTCATCATTTGCTCGAGCAGTGCTGCCAGCGCGCCGTC GCCGAACAGCGCCACCTGCGTGCCGTGCTGGGTGACGAGCCGCAGGTCAGTGCCGAGTTGTCGGCAGAAGAACTCGATCGCTTGCTCGACCCTGCCCATT ACCTTGGCCAGGCCCGCGTCTGGGTGGCGCGCGCCGTGGCTGAACATCAACGTTTCACTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGAGACTGCTGTGGCGCATTTGCAACTGGCCGATGGCGTACTGAACTATCAAATCGATGGCCCGGCGGATGCTCCGGTGCTGGTCTTGTCCAACTCCCT CGGCACCGACCTGGGCATGTGGGACACGCAGATCCCCGTGTGGAGCGAGCACTTCCGTGTGCTGCGCTATGACACCCGCGGCCACGGCGATTCGCTGGTG ACCGCCGGCCCTTACAGCATCGAGCAACTGGGCCGCGACGTCGTGGCCTTGCTCGACGCCCTGGACATCAACAAGGCGCACTTCGTCGGCCTGTCGATGG GCGGCCTGATCGGCCAGTGGCTGGGCATCAACGCCGGCGAACGCCTGGCCAGCCTGACCCTGTGCAACACCGCCGCCAAGATTGGCAGCGATGAGGTCTG GAACCCGCGTATCGACACCGTGCTCAAAGGCGGCCAACAGGCCATGGTCGAGCTGCGCGACGCGTCCATCGCCCGCTGGTTCACCCCAGCCTTCGCCCAG
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| Amino Acid Sequence |
>3-carboxy-cis,cis-muconate cycloisomerase
MTYRADNQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAEAAAGLVPHSAVAAIEAACKAERYDAGALADAIASAGNSAIPLVKALGKVIASGVPEA ERYVHLGATSQDAMDTGLVLQLRDALDLIEADLAQLADTLARQALHHADTPMVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLCLQFGGAS GSLAALGSKAMPVAEGLAEQLKLHLPEQPWHTQRDRLVEFASVLGLIAGSLGKFGRDVSLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAAT RVPGLLSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMQVDAERMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAV AEQRHLRAVLGDEPQVSAELSAEELDRLLDPAHYLGQARVWVARAVAEHQRFTA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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