Pseudomonas sp. LAIL14HWK12:I7, D886_RS0111520 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TAACCGCGCGCGCTGCGCTAATCTGTAACTCAGTTGTTACAACAACCGCCAGTACCGCGCATTCCTGGCACCGGGTACGGACTGCACTTGTGATCATCTT CAACAAGCGGCATATCGAACGCCATCAGTTGCCCTGCGTTCTCAAGGTCTTCAACCGTTTTACCGATCAGCCGATCGGCCAGCTGGGTAATGCCTCAGTA GACGGTTTGATGCTCATCAGCCAACTGCCGGTGCTGGTCGGGCCGGATTACGAGCTGCAATTGCGTTTGCCGTTGGCCGGTGGCGGGTATCAGTTCATCA ACCTCACCGCCAGTTGCCTGTGGTGCCGCGAAGACCAGACGCCCGGCCATTACGACTCTGGCTTCATGTTGCTGCAGGCGCCCCGCGAGTACGACGAGTT CGTTCGCTCTCTGCACGACTATTTCAGTTTCCGCCCCGCCAACGCTTCCGCTAGAGCCGAGTAGGCTAGAATCGGGTCGACCTCGATACAGGACGACCCC
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| DNA Sequence for Gene |
>D886_RS0111520
|sbcB
GTGAGCTCCAGCATTTTCTGGCACGACTACGAAACCACTGGTATCAACCCGCGCTGCGACCGGCCGCTGCAGGTGGCCGGTGTGCGCACCGACTTCGACC TCAACGAAATCGAAGAACCGATCAGCCTCTATTGCCGCCCCTCGGACGACATCCTGCCGCACCCGGCTGCTTGCCTGGTCACCGGCATCACCCCGCAACA GCTGGAAACCCAAGGGCTGTGCGAAGCCGAATTCATGACCCGGGTGCACGCGCAACTGGCGCGCCCAGGCACCTGTGGCGCTGGCTACAACACCCTGCGC TTTGACGATGAAGTGACGCGCTATAGCCTTTACCGCAACTTTTTCGACCCTTATGCCCGTGAGTGGCAGGGCGGCAACAGCCGCTGGGACCTGATCGACA TCGTGCGCACGGCCTACGCCTTGCGCCCTGAAGGCATCGAGTGGCCGCAGCAGGATGGCCGTACCAGCCTGCGTCTGGAGCTGCTCAGCAAAGCCAATGG CATCGACCATGGCCACGCCCACGAGGCACTTTCCGACGTGCGGGCCACGATTGCCCTGGCGCGCTTGATCCGGCAGAAACAGCCGAAATTGTATGAGTGG CTGTTTCAGCTACGCAGTAAACAAAAAGTGATGGAACAGGTCCGTTTGTTGCAGCCGCTGGTACATATTTCGGGGCGTTTTTCGGCGGCCCGTAATTACC TGGGTGTGGTGCTGCCGCTGGCGTGGCACCCGCGCAATCGCAATGCCCTGATTGTCTGCGACCTGCATCAGGAAACCCTACCGTTATTGCGGGAAAGTCC TGAAGTTCTTCGTCAGCGCTTGTATACCCGCCACGAAGAATTGGCCGAGGGCGAATTACCCGTTCCGCTTAAATTGGTGCAGATCAACCGTTGCCCAGTG CTGGCGCCACTCTCGGTATTGCGCCCGGCCGATCAACAACGGTTGGGCATCGACTTGACGTTGTTACAATCGCGTGGCGAACAGCTGGCCAATCAACAAG CACACTGGCAAGACAAGCTGGAACACATCTACGGCAAGGATGATTTCACGCCGAGTGAAGATCCTGAACAACAGTTGTATGACGGTTTTCTGGGCGACCG TGATCGGCGTTTGTGTGAGCAAGTTCGCACGCTGGAACCCGCGCAATTGGGCCAGGGGCACTGGATGTTCGATGACCCGCGCATGCCTGAACTGTTGTTC CGTTATCGGGCTCGCAACTTCCCTGAGACCTTGAACAGTGAAGAGCGTCAGCGTTGGTATGGCTTCTGTCAGCAACGCCTGAGCGACCCGCAGTGGGGCG CGCCGAATACCCTGGGTGATTTCGAGCAGGCGCGGCAGCGTGCCTGGGAAGGCGCCGACGAGGCGGGCCGGCGGGTACTGGATGCGTGGCAGGAACACGC CCGAAAACTGCAGGCACAATTTGCAATTGCGCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGAAAAACAAAAACGCCGGCATTGAGCCGGCGTTTTTTTTGTTGCGCTAAGCAACGTTGAGCGTGCGGACAATCAGTCCAGCAGGGTCGCCCAGCTTT CAACCACGTCACCACCCCACTTGGCTTTCCATTCTTTCAGGGTTTTGTGGTTGCCGCCTTTGGTTTCGATCACTTCACCATTGTGCGGGTTCTTGTATTG CTTGACCTTGCGCGCACGCTTAGTGGCGGTAGGCTTGACCGCGCCGCGAGGCGCTTTGCTCAGTTTCGACTCTGGGTCGAGCAGGGCAATCACATCACGC AGCGACTTGGAGTACTCGCCCATCAGCGTGCGCAGTTTGCCTTCGAACTCCAGCTCTTGCTTCAGCTTGTCGTCTTGCGAGAGGTTGGCCAGACGGGCTT GAAGTTCCTTGATGGCTTCTTCGGTGGCGCGGTACTCGTTAATCAGGGACATGGAGAGTTCCTTTAATGCGTGTTCAGAAATGTGTGGGCCAATAATAGA
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| Amino Acid Sequence |
>exonuclease I
MSSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIEEPISLYCRPSDDILPHPAACLVTGITPQQLETQGLCEAEFMTRVHAQLARPGTCGAGYNTLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELLSKANGIDHGHAHEALSDVRATIALARLIRQKQPKLYEW LFQLRSKQKVMEQVRLLQPLVHISGRFSAARNYLGVVLPLAWHPRNRNALIVCDLHQETLPLLRESPEVLRQRLYTRHEELAEGELPVPLKLVQINRCPV LAPLSVLRPADQQRLGIDLTLLQSRGEQLANQQAHWQDKLEHIYGKDDFTPSEDPEQQLYDGFLGDRDRRLCEQVRTLEPAQLGQGHWMFDDPRMPELLF RYRARNFPETLNSEERQRWYGFCQQRLSDPQWGAPNTLGDFEQARQRAWEGADEAGRRVLDAWQEHARKLQAQFAIAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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