Pseudomonas sp. LAIL14HWK12:I7, D886_RS0109955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCTGATTGCCGAAGGCAAGGAAGTGCGCCTGAAGATGTGGCTGTTCCCGTGGCTGACCTACCTGGTAATCGCGTTCATCGTGGCTGCCCTGGTGACCA TGGCGTTCATGCCTGACTACCAGATCCTGGTGATCTCCACCGGTATTGCTGCCGCAGTCGTGGTAGCCATGGGTGTGGTGCATCAGATCCGTAGCGCCAA ACGCCACTAAGCTTCAGTTGTGGTTCAAGACGGCCGGCTCCCTTGAGGACCCGGCCGTTTCGCGTTGTTGGGCCGGGTGTTTGTCCGGCGGCATGTGAAA ACGCTGGTTCATCCACGGCGAGCCGAGGAGGGCGGCAGCGGCGATCAGGGCCAGTATGGCGAGGGCCAGGAATGTTTTCATGGGCAGGCGCATATAAGGA CTGACTTCAAGGATAGACGCTCGGTTCCGGCCCGCGAATAGACCCTAAGTGCCACTACTTGGCTTATGCTGGGCACATTGCCCGCCCAAAGGAGCCGCAC
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| DNA Sequence for Gene |
>D886_RS0109955
ATGGCCTGGTCCGCCACCCAGTATTCCCTCTTCGAAAACGAGCGCACCCGCGCCGTACGCGACCTGCTGACCGCCGTGCCGCCACGCCCGGTCCGCCATG CCACCGACCTGGGCTGCGGCCCGGGCAACTCGACCGAGGTGCTGCTGCAGCGCTACCCCGATGCCCAGGTGACGGCGTTGGACAGCGACCCGGACATGGT CGAAAAGGCCCGGGAGCGCAAAAGGCTGTGTGTACCACGCGTGCGCTGCGCCATTGCCGACATCGCCCAGTGGTCCGCGCCAGAGCCGCAAGACCTGATC CTGGCCAATGCCTCGCTGCAATGGGTGCCGGACCACGCTTCGCTGTATCCGCACCTGGTCAGCCAGCTGAGCGAGGGCGGCAGCCTGGCGGTGCAAACCC CTGACAACCTTGACGAGCCAGCGCACCGGCAACTGCGCGAAATCGCCAGCAAAGGCCCCTGGGCCGCCAAATTCGCCGATTTCCAGCTACCGCCCAGGCA CAACGCCGCGTTCTATTACGACTTGCTCAGCCCGCGGAGCGCGCGGGTGGATGTGTGGCGTACTACGTACCATCATCCGTTGGAGGGTGGCGCCGAAGCG GTGGTGGAGTGGTTCAAGGGCTCGGCGTTGCGGCCTTACCTGGCCAGGCTGGACGAACAAGAGCAAGCAGCCTTCCTGCAGATGTACCTGCAGGCGATGC AGCACGACTACCCACCGGCCACCGACGGTAAGGTGCTGTTGCCGTTCCCGCGCTTGTTCGTGATCGCTACGCGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGGCGCCTGCGCCCGAGCACGTAGCCGTAGATGCCGAGGTTGACCAGCAGGACGATGGCGCCCAGCAGCCATTGGATCTGCGGCGTCAGCCCGGCCGG ATAGATCAGCGGCCAGATGTAATGTTCGACGAAACCGCCGTGGTAGCCCGCGTCGCCGGCGGCGAAGCGCATGCGGTTTTCCCAGTCGGTCAGCGGGCAT TCCAGGTGCAGCCCTTCCACCGCCAAGCCCCAGGCCAGGGCAGGCAGGTGGACGAGCAGGGCGGGGCGCCACTTGAGTACCAGCAGGCCACCGAACAGCA CCCACAAGATGAAGGCCAGGTGCAAAAGCACCAGAGCGTCGGCGGCAAATCGAAAGAGCATGGGGCGTGATCCTCGTGATCCTCGTGATCCTCGTGATCC TCGTGATCCTCGCGATCCTTGTAGGAGCAGCCTTGTGCTGCGAAGAGGCCGGTACAGGCACCATACATCAATGCTGCCTGCACCGGCCTCTTCGCAGCAC
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| Amino Acid Sequence |
>trans-aconitate methyltransferase
MAWSATQYSLFENERTRAVRDLLTAVPPRPVRHATDLGCGPGNSTEVLLQRYPDAQVTALDSDPDMVEKARERKRLCVPRVRCAIADIAQWSAPEPQDLI LANASLQWVPDHASLYPHLVSQLSEGGSLAVQTPDNLDEPAHRQLREIASKGPWAAKFADFQLPPRHNAAFYYDLLSPRSARVDVWRTTYHHPLEGGAEA VVEWFKGSALRPYLARLDEQEQAAFLQMYLQAMQHDYPPATDGKVLLPFPRLFVIATR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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