Pseudomonas sp. LAIL14HWK12:I7, D886_RS0108115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACTTTCGGGTAGCGCTGGCGAAACACCTTGAGCGCGTGCGGCAGCAGGTTACCGGCGAAGGCTGGTATGGCCGCCACCGAAACCCGCCCCAGTTGCAGG GTGAAACGCTGGCGCAGCATTTCTTCGGTGTCGTCCCAGTCGGCCAGCAGGCGCCGGGCCAGCGGCAGCAGCACCTCACCTTCGGCAGTCAGGCTGACAC TGCGGGTGGTCCGGCTGAGCAGGGCGCCGCCGAGGTTTTCCTCAAGCGCCTTGATGGTCAGGCTCAACGCCGGTTGCGATACATGCAGGTGTTCACCGGC CTGGGCGAAGCTCTGGTACTTGGCCACGGCGACGAAGGCGCGGAGTTGCTTGACGTTCATGACGGCCCTGATCGTTGTTTTGAAAAAGTTATCAATCGAT GATGAAAACAAAATTAACAAATCAGTCGACTAAGGTGAAGATGGGGGCACACGCTCACCGACAGCCTCGTCGGTTCAACAACTACAAAAGGCGGATCAAC
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| DNA Sequence for Gene |
>D886_RS0108115
ATGGCCGGACTGGACAAGCGCGTAGCAACGTATGAAGAGGCCCTCGACGGCCTGACCGACAACATGACGGTATTGGCCGGTGGTTTTGGCCTGTGTGGCA TCCCGGAAAACCTTATCAACGAGATCAAGCGCCGTGGCGTCAAGGGCCTGACCGTGGTGTCGAACAACTGCGGTGTCGACGGTTTCGGCCTCGGCGTATT GCTGCAAGACCGGCAGATCCGCAAGATGATCGCCTCCTATGTCGGCGAAAACGCGGAATTCGAACGCCAACTGCTCAGTGGTGAGCTGGAAGTCGAACTG ACCCCACAAGGCACCCTGGCCGAAAAAATGCGCGCCGGTGGCGCTGGCATCCCGGCGTTCTACACCGCCACTGGCTACGGCACCCCGGTCGCCGATGGCA AAGAGGTGCGTGAATTCAAGGGCCGCCACTACATTCTCGAAGAGTCCATCACCGGCGACTTCGCCATCGTCAAGGGCTGGAAGGCCGACCACTACGGCAA CGTGGTGTACCGCAACACCGCGCAAAACTTCAACCCGCTGGCGGCCACGGCCGGCAAGATCACCGTGGTCGAAGTGGAAGAGATCGTCGAACCAGGCGTG CTGCTGCCCAGCGAGATCCACACCCCGGGTATTTTCGTTGACCGCGTGATTGTCGGCACCTTCGAAAAGCGTATCGAAAAGCGCACCGTCAAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCCATCCTTCAGAACAACAAAGAGATCCTGACCATGGCACTGACCCGCGAACAGATGGCGCAACGCGTCGCCCGTGAACTGAAGGACGGCTACTACGT CAACCTCGGCATCGGCATCCCGACCTTGGTGGCCAACTATGTACCCGCTGACATGGATGTGATGTTGCAGTCGGAAAACGGCTTGCTCGGCATGGGCGAA TTCCCTACCGAGAGCACGATCGATGCCGACATGATCAACGCCGGCAAGCAAACCGTCACCGCCCGCCGTGGCGCGTCGATCTTCGATTCGGCGCAATCGT TCGCCATGATCCGCGGTGGCCACGTCGACCTCACCGTGCTCGGCGCCTTCGAAGTGGATGTGCAAGGCAACATCGCGTCGTGGATGATCCCCGGCAAGCT GGTCAAGGGCATGGGCGGCGCCATGGACCTGGTGGCCGGTGCCGACAACATCATCGTGACCATGACCCACGCGTCCAAGGACGGCGAGTCCAAGCTGCTG
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| Amino Acid Sequence |
>succinyl-CoA:3-ketoacid-CoA transferase
MAGLDKRVATYEEALDGLTDNMTVLAGGFGLCGIPENLINEIKRRGVKGLTVVSNNCGVDGFGLGVLLQDRQIRKMIASYVGENAEFERQLLSGELEVEL TPQGTLAEKMRAGGAGIPAFYTATGYGTPVADGKEVREFKGRHYILEESITGDFAIVKGWKADHYGNVVYRNTAQNFNPLAATAGKITVVEVEEIVEPGV LLPSEIHTPGIFVDRVIVGTFEKRIEKRTVKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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