Pseudomonas sp. LAIL14HWK12:I7, D886_RS0105570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGTGAAGCCCGGTATTTTCGACCTGGACGACATCGACCACTTCAGCACCCGTGCGGTGAGCTTCTTCCTGGGGCTGCCAGGCCCGCGTCACCCTAAGC AGGCCTTCGACGTGATGGTCGCGGCGGCGCGCAAATTGGCCCATGAGCTCAATGGCGAACTCAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACCAT CGAGCACTACCGCCAGCGCATCGTCGAGTTCGAGCGCCGCGCGCTGACCCAGAAGCGCTGATAGATCCAGACGAAAGAGCAGCCTGCGGGGCGTGCTGGC CGGTTCGGGCTCCTAGGTTGTCTGATCTGGCTCCTTCGCGGGTAAACCCGCTCCCACAGGTACCCCACTGTTTTTGAACCCAGTGGCGTACCTGTGGGAG CGGGTTTACCCGCGAAGGGGCCAGACCAGGGATAAAGGATCCAGGGCCCCAGGCAACGTCCCCCAGGCTGCTCTTTTGCTTTGCAAGAGAAGACAAACGA
|
|
| DNA Sequence for Gene |
>D886_RS0105570
ATGACCGCCGAATCCCGAATCCACGACCTGCGCGCCGAGCTCGACCAGCATAACTACCGCTACTACGTGCTCGATGAGCCCAGCGTGCCCGATGCTGAAT ACGACCGCCTGTTCAATGAGCTCAAGGCGCTGGAAGCCGAACATCCGCACTTGGTAACGCCTGACTCGCCAACCCAGCGCGTCGGCGGCCAGGCCCTGGC TGCATTCAGCCAGGTGCGCCACGAAGTGCCCATGCTCAGCCTGGGTAACGCCTTCGAAGAAGCTGACCTGCGTGAATTCGGCCGCCGTGTGGTAGATGGC CTCGATCAGCCGGGTGCGGTCGACTACAGCTGCGAACCCAAACTCGATGGCCTGGCGGTAAGCCTGCTGTACCGCGACGGCCAATTGGTGCAAGGCGCCA CCCGTGGCGATGGCACCACCGGCGAAGACATCAGTGCCAACGTGCGCACCGTGCGCAACATCCCGCTTAAGCTGCAGGGCGAAGGTTGGCCCGCGGTGCT GGAGGTGCGTGGCGAGGTGTACATGAGCAAGGCCGGTTTTGATCGGCTCAATGCCGCCCAGGCAGAAGCGGGTGGCAAAACCTTCGCCAACCCGCGCAAC GCCGCCGCCGGCAGCCTGCGCCAATTGGATTCGAAAATCACCGCCAGCCGCCCCCTGGAGTTCTGCTGCTATGGCGTAGGCCAGGTGTCCGCAAGCATCG GCGACAGCCACATTGGCATCCTTGAGCAGCTCAAGGCCTGGGGCCTGCCGATCAGCCGTGAGCTACGGCATGCCGCCGGCATCGAAGAGTGCCTGGCGTA TTACCGCGACATCGGCGAGCGCCGTAACAGCCTGCCGTATGAGATCGACGGCGTGGTGTTCAAGGTCAACAGCCTGGCGTCTCAGCGTGAACTGGGCTTC CGCGCGCGCGAGCCGCGTTGGGCGATTGCCCACAAGTTCCCGGCCATGGAAGAGCTGACCGAGGTGCTGGATGTGGAATTCCAGGTGGGGCGTACCGGGG CGGTGACGCCTGTGGCACGCCTGAAGCCGGTCAAAGTGGCCGGCGTGACCGTGTCCAACGCCACCCTGCACAACATGGACGAAATCGCCCGCCTGGGCCT GCGCATTGGCGACACGGTGATCATCCGCCGTGCTGGCGACGTGATCCCGCAAGTCATGCAAGTGGTGCTCGAGCGCCGCCCCGAAGATGCCCGCCCGGTT GAAGTGCCGAGCGCATGCCCGGTGTGTGGCTCGCAGGTCGAGCGCACGCAGCTGGTCAAACGCAGCAAAGGCAAGGAAACCACCAGTGAAGGCGCGGTGT ACCGGTGCGTCGGTCGCCTGGCCTGTGGCGCCCAACTCAAACAGGCGATCATCCACTACGTTTCGCGCCGCGCGATGGATATCGACGGCCTGGGCGAAAA GAGCGTCGAGCAGTTGGTGGATGAAGGGCTGATCGGCTCGCCAGCAGACCTGTACAAGCTTCAGTTCGACCAGATCGTCGGGCTGGAAGGGTTTGCCGAA GTTTCCAGCAAGAAGCTGCTGGATGCCATCGAAGCCAGCAAGCGCCCGAGCCTGGCGCGCTTCATCTACGCCCTGGGCATTCCGGATGTGGGTGAGGAAA CCGCCAAGGTCCTGGCTCGCTCGCTGGGCAGCTTGGCGCGGGTGCAGCAGGCGCTGCCACAGGTGCTGACCTACCTGCCAGACATCGGGCTTGAAGTGGC ATATGAAATCCACAACTTCTTCGAAGACGAGCACAACCGCAAAGTCATCGAGCAACTGCTCGCCTGCGGCATGCAGTTGCAGGACGAAGGCGACTTGGCC GCCGAGTTCGCCGCCAGCACCACCCTGGCCGGCATGATTGCCAAGCTCGACATCGCCTCGGTCGGCCCGACCGGCGCTGAGAAGCTGGTGGCCAAGCTCG ACAGCCTGGAAAAGATTATCGCCGCCGACGGTATCGACCTGCGCCAGGCCCTGGCCGCCAAGCAGGCCGAGGCCGTGCGCGAGTTCTTCAAGGACGAAGC GAACCAGAAGCTGGCGCGGGACATCGAAGCCCAGTTGCTGGCGTTCGGCATGCACTGGAACAGCGAGAAGAAAGTCGCCGAAGGCCTGCCTTTGGCCGGG CAGACCTGGGTGTTGACCGGCACCCTGGAGCGCATGAGCCGCGACATTGCCAAAGACAAACTGGAAAGCCTCGGCGCCAAGGTGGCCGGTTCCGTTTCCG GCAAGACCCACTGCGTGGTTGCCGGCCCTGGCGCGGGCTCCAAGCTGGCCAAGGCCAGTGAGCTGGGTGTGAAGGTGCTGGACGAAGACGCGTTCATCGC CTTTCTGGCGGAGCAGGGCATCGCAATCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCACCTTTAAGCAAGTCATTGAGAAATGATGACTTTTTCTCCCCGCAGAGGTTGTAACTTCGCCTCAGACCGGTACAATGGCGCGGCTCGCTGCTTAGC GAGTTGCGTCAGTGGTGGCCCCATCGGTCCCCCCGCATTGATTACCCGTTAACCTGGTCAGGCCCGGAAGGGAGCAGCCATAGCGGGAACATCGAGTGCC GGGGTGTGGCTGGTGGGGCTGCCTCCATTCTTTAAATCCTTGAGCTCTCAAGGATGTCTCGTTCAAAAATACCTCTTAGTCAATGTGCGAAAGCGCATGA CGTCTCGACGTTTCAACCGCTGCTCTGTGAGAATGCCAGAAGGCCATACCGCCTCCAGAACGGACGCTGCGCCATGGACAGCCTTCCTACCCTCGAAACC TCGCGCCTGATACTCACGCCGCTGCAGCTTGGCGACGCACCCGCTATTCAGCAGCTGTTCCCGCACTGGGACATTGTCCGCTACCTGGACAGCCGCGTGC
|
|
| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAESRIHDLRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGQALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDG LDQPGAVDYSCEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN AAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGDSHIGILEQLKAWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLASQRELGF RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPV EVPSACPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADLYKLQFDQIVGLEGFAE VSSKKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIEQLLACGMQLQDEGDLA AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLEKIIAADGIDLRQALAAKQAEAVREFFKDEANQKLARDIEAQLLAFGMHWNSEKKVAEGLPLAG QTWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFIAFLAEQGIAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|