Pseudomonas sp. LAIL14HWK12:I7, D886_RS0104680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCAGGATGCACCACTGGGCGCAGTTGGGCGACCAGATGCCCACGCGGTCGCCGGTGTTCACGCCCAGGGCCATCAAGGCGCGGGCGTGCACATCGACC TGTTCGGCCAACTGCCGCCAGCTGTAACGCAGGCCCTGGTGGCGCGCCACCAACGCTTCGCCATCGGCGCAGCGGGCCACGGTGGCATCGAAGGCCTGGC CGATGGTTTGGGTCAGCAAGGGCCGGTCCTGGCGACCGCGGGTATAGCTCGGTTGACTCATGGGTGTCCCTTCTTGTGGTTGTTCTGGGCACGACTGAAG CAAGCGGGAGATACTCTGGCGCAGATTTACGTTTACGTAAAGGTGATGAGGCGATTGACAGTGTCTGTTGGCAGGCTTACGTTAACGTAAAGGTGAGAAC GACATCGCATCTATCGACCTAAGCCCGCTCCCACAGGGGACGATGAAAAGTCCATGAGCTACGGTGTTACCCAATTTCAAGAACAAGAAGGTGCCCCCGC
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| DNA Sequence for Gene |
>D886_RS0104680
ATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAAACCATCGACATGCTCCGCGACCAGGTCAGCACCTTCGTCGCCGCCGAACTGGCGCCGCGCGCCG CGCAGATCGACCACGACAACCTGTTCCCCGCCGACATGTGGCGCAAGTTCGGTGACATGGGCCTGCTGGGCATCACCGTGTCGGAAGAGTACGGCGGCGC CGGCCTGGGCTACCTGGCCCACGTGGTGTCGATGGAAGAAATCAGCCGCGCCTCGGCCTCGGTCGCCCTGTCCTACGGCGCCCACTCCAACCTCTGCGTC AACCAGATCAACCGCAACGGCACCCATGAGCAAAAGCTCAAGTACCTGCCTAAGCTGATCAGCGGCGAGCACATCGGCGCCCTGGCCATGAGCGAACCTA ACGCCGGCTCCGACGTGGTGTCGATGAAGCTGCGCGCCGAAAAACGCGGCGACCGCTACGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGCCCCGA CGCCAACACCTACGTGATCTATGCCAAGACCGACCTGGACAAGGGCGCGCACGGCATTACCGCGTTCATCGTTGAACGCGACTGGAAAGGCTTCAGCCGC AGCAACAAGTTCGACAAGCTGGGCATGCGCGGCTCCAACACCTGCGAGCTGTTCTTCGATGACGTCGAAGTACCGGAAGAAAACATCCTCGGCCAACTCA ACGGCGGCGTGCGCGTGCTGATGAGCGGCCTGGACTACGAACGCGTGGTGCTGTCCGGCGGCCCGACCGGCATCATGCAAAGCTGCATGGACCTGGTGGT GCCCTACATCCATGACCGCAAGCAGTTTGGCCAAAGCATCGGCGAGTTCCAGCTGATCCAAGGCAAGATCGCCGACATGTACACCCAGCTCAACGCCAGC CGCGCCTACCTGTACGCCGTGGCCCAGGCCTGCGACCGCGGCGAGACCACCCGCAAGGACGCCGCCGGGGTCATCCTGTACACCGCCGAACGCGCCACGC AAATGGCCCTGGAAGCGATTCAGATTCTGGGCGGCAACGGCTACATCAACGAGTTCCCGGCGGGCCGCCTGCTGCGCGACGCCAAACTGTACGAAATCGG CGCTGGCACCAGCGAAATCCGCCGGATGTTGATCGGCCGCGAATTGTTCAACGAAACCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACAAGGGACGGGCGCACATGGCTACCTTGCATACCCAGATCAACCCGCGATCGGCGGAATTCGCCGGCAACAGCGCGGCCATGCTCGAACAGGTCCAG GCCCTGCGTGGCCTGCTCGCGCACATTGCGCAGGGCGGCGGCCCCAAGGCCCAGGAACGGCACACCTCACGCGGCAAACTGCTGCCGCGTGAACGCATCG ACCGCCTGCTGGACGCAGGCTCCCCCTTCCTTGAAATCGGCCAGCTGGCGGCCCACGAGGTGTATGGCGAAGACGTGCCGGCCGCCGGCGTGATTGCTGG CATTGGCCGGGTAGAAGGCGTGGAATGCATGATCGTGGCCAACGACGCCACGGTCAAAGGCGGCTCGTACTACCCGCTGACCGTCAAAAAGCACCTGCGC GCGCAGACCATCGCCCTGCAAAACCGCCTGCCGTGCATCTACCTGGTGGACTCCGGCGGCGCCAACCTGCCCCGCCAGGACGAAGTGTTCCCCGACCGCG
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MHYPSLNFALGETIDMLRDQVSTFVAAELAPRAAQIDHDNLFPADMWRKFGDMGLLGITVSEEYGGAGLGYLAHVVSMEEISRASASVALSYGAHSNLCV NQINRNGTHEQKLKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKRGDRYVLNGSKTWITNGPDANTYVIYAKTDLDKGAHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGQLNGGVRVLMSGLDYERVVLSGGPTGIMQSCMDLVVPYIHDRKQFGQSIGEFQLIQGKIADMYTQLNAS RAYLYAVAQACDRGETTRKDAAGVILYTAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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