Pseudomonas sp. LAIL14HWK12:I7, D886_RS0101670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTTCCTTGATGCCGCCGTGCTGGCCGAGGTGCTGGTGAATGCCAGCGAGCGCGGCGAACGGCTGGCAGATGTAAAGGTGCTGAGCCGCTATGAGCGCCG GCGCATGCCGCACAACTTGGGGCTGATGGCCGCCATGGAAGGGTTCGAGCGGCTGTTCCAGGCCAATCCGCTGCCGTTGCGCTGGTTGCGTAACAGTGGC TTGAAGCTGGTGGAGCAGATGCCGGAGGCCAAGGCATTATTCGTGCGCCAGGCGTTGGGTTTGAGCGGAGACCTGCCAGAATTGGCCAAGCCCTGACGTT AGCACGGCCTCTGTAGGAGCAGCCTTGCGCTGCGAAAGGGCCGGTATGACGAGCACCGTTGTGGCTTCTTCGCAGCACAAGGCTGCTCCTACAGGAGGCG CTTGCGCGGGCTGCAACATCCGGTAACGGCTCCGAGGGTGAGGGACAAAATGGGATTCACTACCATTTGCGCCTCTCATACGATCCGAGGAGTGCATTTC
|
|
| DNA Sequence for Gene |
>D886_RS0101670
ATGTTGCCACGCAAGCCCCTACTGGCCGCCCTGGCCCTGACGTTGTTCGGCGGCACTGCCCAGGCAGCGGAAGAAGTGGTGGTGTACTCCTCGCGCATCG ACGAGCTGATCAAGCCGGTGTTCGACGCCTACACCGCCAAGACCGGGGTCAAGGTCAAGTTCATCACCGACAAGGAAGCCCCGCTGATGCAACGCATCAA GGCCGAGGGCGAGAACGGTGTGGCCGACCTGCTGCTGACCGTCGATGCCGGCAACCTCTGGCAGGCCGAGCAGATGGGCATCCTGCAACCGATCAAATCG GACATCATCGGCCAGAACATTCCGCCGCAATACCGGGCCTCGTCCCACGACTGGACCGGCCTGAGCCTGCGCGCGCGCACCATCATCTACTCTACTGACC GGGTCAAACCGGATCAGCTGAGCACCTACGAAGCCTTGGCCGACAAGCAGTGGGAAGGGCGTCTGTGCCTGCGCACTGCGAAGAAGGTCTACAACCAGTC GCTGACCGCCACCTTGATCGAGAACCACGGCGAGGCGAAAACCGAAGCCATCGTCAAAGGTTGGGTGAATAACCTGTCCACCGACGTGTTCTCCGATGAC AACGCCGTGATCCAGGCCATCGAAGCTGGCCAGTGCGACGTGGGCGTGGTCAACACTTACTACTACGGGCGCCTGCATAAACAAAACCCCACGTTGCCGG TCAAGATCTTCTGGCCCAACCAAGGTGACCGCGGTGTGCACGTCAACCTGTCGGGTATCGGCCTGACCAAGCATGCCCCGCACCCTGAGGCTGCGAAAAA GCTGGTGGAATGGATGACCGGCGAGGACGCGCAGAAGCTGTTCGCCGACATCAACCAGGAGTTCCCGGCCAACCCGAAGGTCAAGCCATCGGACGAGGTA GCCGCCTGGGGCAGCTTCAAGGCTGACAGCATTCCGGTCGAAATCGCTGGCAAGCGCCAGGCCGAAGCGATTCGCTTGATGGATCGGGCTGGCTGGAACT AA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTTATCCTTCCGGGGCCTGCAAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACAGGTTTTCCACTGAAGCGTGTGTAAACCCTGTGGGGGCGGGCTTGCCC GCGAACGACCGCGCAGCGGTCGCAATCGCAACCGAGAGTTCTGAACTTGCCCCACACCCCCCAACGTCGCTGGTACCTCCCGGTCGCCCTGGTCGCCGCC CTGGTGCTGTTGCCTCTGAGCGTCCTGCTGCTGTCATGGCAGTCGATCGACCTGCAGATCTGGTCACACCTGCTCGACACCCAGATGAGCCGCCTGCTCG GCAACACCCTGACCCTGGTAGTAGGCGTAGGCATCGGCGTGACCGTATTGGGGGTCAGCCTGGCCTGGCTCACCAGCCTCTGCGAATTCCCTGGCCGGCG CTGGCTGGACTGGGCGCTGATGCTGCCGTTTGCCATCCCCGCCTACGTGCTGGCATTCGTTTTCGTCGGCCTGCTGGATTTTGCCGGCCCGGTGCAAAGC
|
|
| Amino Acid Sequence |
>iron ABC transporter substrate-binding protein
MLPRKPLLAALALTLFGGTAQAAEEVVVYSSRIDELIKPVFDAYTAKTGVKVKFITDKEAPLMQRIKAEGENGVADLLLTVDAGNLWQAEQMGILQPIKS DIIGQNIPPQYRASSHDWTGLSLRARTIIYSTDRVKPDQLSTYEALADKQWEGRLCLRTAKKVYNQSLTATLIENHGEAKTEAIVKGWVNNLSTDVFSDD NAVIQAIEAGQCDVGVVNTYYYGRLHKQNPTLPVKIFWPNQGDRGVHVNLSGIGLTKHAPHPEAAKKLVEWMTGEDAQKLFADINQEFPANPKVKPSDEV AAWGSFKADSIPVEIAGKRQAEAIRLMDRAGWN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|