Pseudomonas sp. LAIL14HWK12:I7, D886_RS0100580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGCCCGATGCTGCTCAAAGTGGTCACCCCGATCAGCGCCGAAGACACCGGCGGCACGTTGCATGACCGCCTCGCCGAAATGGGCCCGCCTGCGGTGA TTCAAGCCATTGCTGGCCTTGCCGACGGCTCGCTGCAGGGTGAAGGCCAGGATGACGCCCTGGCCACCTATGCCCACAAGCTGAACAAAGACGAAGCACG CATCGACTGGAGCCGCCCGGCCGTGGAGCTGGAGCGCCTGGTGCGTGCCTTCAACCCGTGGCCGGTGTGCCACAGCACCCTGGACGGCGAAAGCGTGAAG GTGCTGGCTGCGACGTTGTCCACAGGCAACGGCGCCCCTGGCGAGATCCTGTCTGCCAGCAAGGACGGCCTGGTAGTCGCCTGCGGTGACCAGGCACTGA GCCTGACCCGTCTGCAACTGCCCGGCGGCAAGGCACTGAACTTCAGCGACTTGTTCAACAGCCGCCGCGAGAAATTCGCCACCGGCAAGGTGCTCGGCCA
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| DNA Sequence for Gene |
>D886_RS0100580
ATGAACCCACGCCTGGCCGCCGCCCGTGCCTTGGCCGCTGTGCTCAGCGGCAAGGCTTCGCTGAACAGCTCGTTGCCGGCACAACTGGACAAGGTCGACG AACGCGACCGGGGCCTGACCCAAGACCTGGCCTTCGGTACCGCCCGCTGGCAGCCGCGCCTCGACCTGCTCGCTGCGCAGTTGCTGCAGAAGCCGTTCAA AGCGGCCGATGCCGATGTGCAGGCCTTGATGCTGGTCGGCCTGTACCAGCTGTTCTACACGCGCATTCCGGCGCACGCCGCCATCGGCGAAACCGTGGGT TGCGCCGACAAGCTGAAAAAGCCGTGGGCCAAAGGCCTGCTCAACGCCGTGCTGCGCCGCGCGCAGCGTGAAGGCGAAGCGCTGCTCGCTGGCATGGAGC GCGACCCGGTGGTGCGCACTGCCCACCCGCGCTGGCTGCAGAAATCGCTGAAGGCCTTCTGGCCCGAGCAATGGGAAGCCATCTGCGCCGCCAACAACGC CCACCCGCCGATGATTTTGCGGGTCAACCGCCGCCACCACAGCCGCGATGCCTACCTGGCCTTGCTGGCTGAGGCCGGCGTGGGCGCCAGCGCCTGCCAG TACAGCCGTGACGGCATAGTGCTGAATGAGCCCTGCGATGTGCGCAGCCTGCCTGGCTTTGCCGAAGGCTGGGTAAGCGTGCAGGACGAAGCCGCACAGC TGTCCGCCGACCTGCTCGAACTGGCCCCCGGCCAACGCGTGCTCGACGCCTGCTGTGCCCCGGGCGGCAAGACTTGCCACTTGCTCGAAGCCGAAGCTGG CCTGGCGCAGGTGGTGGCCATCGACCTGGAAGCCAAGCGCCTGACCCGCGTGCGCGAGAACCTCGATCGCCTGCAACTGGACGCCGAGCTGATCGCCTGC GATGCCCGCGACACCGCCAGCTGGTGGGACGGCAAAACGTTCCAGCGCATCCTGCTCGACGCCCCGTGCTCGGCCACCGGTGTAATCCGCCGCCACCCGG ACATCAAGCTGACCCGTCAGGCCGACGACATTCCGGCCCTGGCCACGTTGCAGGGCGAGCTGCTCGATGCCCTGTGGCCAACCCTGGAAGTGGGCGGCAT GCTGCTCTATGCCACCTGCTCGAGCTTGCCGACCGAGAACACCGAGGTGATCGACGCCTTCCTCGCCCGCACCCCGGGCGCCCGTGAGTTGGACCTGGCC ACCGAGGCCGGCCTGCGCCAGCCACATGGCCGCCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGGTTCTACTATGCCAAGCTGATCAAGATCGCCGCGT CACGCGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACAACGGTTAGGGAGTAGCGGATGAAGATCATCATCCTCGGCGCGGGGCAGGTGGGCGGTACGCTGGCAGAACACCTGGCCAGCGAGGCCAACGACAT TACCGTGGTCGACACCGACGGCGAGCGCCTGCGCGACCTCGGCGACCGCCTGGACATCCGCACGGTGCAAGGCCGCGGCTCGCTGCCGACGGTGCTGCGC CAGGCCGGTGCCGACGACGCCGACATGCTGGTGGCGGTGACCAACAGCGACGAGACCAACATGGTGGCCTGCCAGGTCGCCTACTCGTTGTTCCACACCC CGACCAAGATCGCCCGGGTACGGGAATCGGCCTACCTCACCCGCGAAGAGCTGTTCCACAACGACCACATCCCGGTCGATGTGCTGATCAGCCCCGAGCA GGTGGTGACCAACTACATCAAGCGCCTGATCGAGCACCCAGGTTCACTGCAGGTAATCGACTTCGCCGAAGGCAAGGCGCAACTGGTGGCGGTCAAGGCG
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADADVQALMLVGLYQLFYTRIPAHAAIGETVG CADKLKKPWAKGLLNAVLRRAQREGEALLAGMERDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLALLAEAGVGASACQ YSRDGIVLNEPCDVRSLPGFAEGWVSVQDEAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLAQVVAIDLEAKRLTRVRENLDRLQLDAELIAC DARDTASWWDGKTFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIDAFLARTPGARELDLA TEAGLRQPHGRQLLAQEGGHDGFYYAKLIKIAASRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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