Pseudomonas sp. 45MFCol3.1, G368_RS0124275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGAGCCACGCACCGGCTTCATGCTCATCGATACGTTGCTGGCCGATGACGTCGGAGCGTTCTTCGATGCCCTGCATCACCTGATCCTGCCAGCCATCG TGCTCGGCACCATTCCGCTGGCGGTGATTGCGCGGATGACCCGTTCGTCGATGCTCGAAGTGCTGCGTGAAGACTACATCCGCACCGCCCGCGCCAAAGG CCTGTCGCCATCGCGCGTGGTATTCGTGCACGGTCTGCGCAATGCGCTGATTCCGGTACTGACGGTGGTCGGCCTGCAAGTCGGCACGCTGCTGGCCGGC GCGGTCCTGACCGAAACCATCTTCTCCTGGCCCGGCATCGGCAAATGGCTGATCGAAGCCATTGGCGCACGGGACTATCCCGTGGTGCAGAACGGCATCC TGTTAATCGCCTGCCTGGTGATTCTGGTCAACTTCGTAGTGGACATCCTCTACGGCTTTGCCAACCCACGCATCCGTCATCAGCGCTGAGATCAATGACC
|
|
| DNA Sequence for Gene |
>G368_RS0124275
ATGACCACTCTCACTACACCGGTAGCAGTCGATCAAAGCCTGCTGTATCCGTCGCCCTACAAAGAATTCTGGCAGGCGTTTTCCCGGAACAAAGGGGCCG TCGCCGGCCTGTTGTTCATGCTGCTGGTGATTTTCTGCGCGATCTTCGCCCCGTGGGTCGCACCGCATAACCCGAGCGAACAGTACCGCGACTTCCTGCT GACCCCGCCGTCCTGGCTGGAAAGCGGGCATATCCAGTTCCTGCTGGGTACCGATGAACTCGGTCGTGACCTGCTGTCGCGTTTGATTCACGGCTCGCGC CTGTCCCTGCTGATCGGCTTGTCATCGGTGGTGATGTCGCTGATTCCGGGCATCCTGATGGGACTGTTCGCCGGGTTCTTCCCGCGCGTGCTCGGCCCGA CCATCATGCGTCTGATGGACATCATGCTGGCCCTGCCGTCCCTGCTGCTGGCGGTGGCAATTGTCGCCATCCTCGGCCCTGGCCTGATCAACACCATTAT TGCCATCGCCGTGGTTTCGTTGCCGTCCTATGTCCGTCTGACCCGCGCCGCGGTGATGGGCGAATTGAACCGCGACTACGTGACCGCCGCGCGCCTGGCC GGTGCCGGTCTGCCTCGCCTGATGTTCGTCACCGTGCTGCCCAACTGCATGGCGCCGCTGATTGTTCAGGCCACCTTGAGTTTCTCCTCGGCGATTCTCG ATGCCGCGGCACTGGGTTTCCTCGGCCTTGGCGTACAACCGCCAACCCCTGAGTGGGGCACCATGCTGGCTTCGGCTCGCGACTACATCGAACGCGCCTG GTGGGTGGTGAGCTTGCCTGGTTTGACCATTTTGCTCAGCGTGCTGGCAATCAACTTGATGGGCGACGGCCTGCGCGATGCGCTGGACCCGAAACTCAAG AACGCCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAGATTCAAATGTCACTGTTAGAAATCAAGAATCTCAACGTTCGCTTCGGCGACGCCAACGCCGTTCCGGTGGTCGATGGTCTCGACATATCCGTGGAA AAGGGCGAAGTGCTGGCCATCGTTGGCGAGTCGGGTTCCGGCAAGTCCGTGACCATGATGGCGCTGATGGGCCTGATCGAGCATCCGGGGATCGTCACCG CCGACGCCCTGAATTTCGACGGCAAGAACATGCTCGCGCTCAGCAACCGTCAGCGTCGACAGATCGTCGGCAAAGACCTGGCCATGGTCTTCCAGGACCC GATGACCGCGCTGAACCCGAGCTACACCGTGGGCTTCCAGATCGAAGAAGTGCTGCGCCTGCACCTGAAAATGTCCGGCAAGCAAGCCCGCGCTCGCGCC ATCGAACTGCTGGAAAAAGTGGAAATCCCAGGCGCCGCCAGCCGTATGGATGCCTACCCGCATCAACTCTCCGGCGGTATGAGCCAGCGTGTTGCAATCG
|
|
| Amino Acid Sequence |
>peptide ABC transporter
MTTLTTPVAVDQSLLYPSPYKEFWQAFSRNKGAVAGLLFMLLVIFCAIFAPWVAPHNPSEQYRDFLLTPPSWLESGHIQFLLGTDELGRDLLSRLIHGSR LSLLIGLSSVVMSLIPGILMGLFAGFFPRVLGPTIMRLMDIMLALPSLLLAVAIVAILGPGLINTIIAIAVVSLPSYVRLTRAAVMGELNRDYVTAARLA GAGLPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPKLK NAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|