Pseudomonas sp. 45MFCol3.1, G368_RS0123105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00007.7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGTAGCCGATGTTCAGGTCCGGCATCGGACGGGCTTCGCCGTCGAACTCGGTGTCGACGCCTGCCATGATTTTCAGCAGCGTGGACTTACCCGAACCG TTGAGACCGAGGACGCCGATTTTGGCGCCGGGGAAGAACGACAGCGAAATGTTTTTCAGGATTTCCCGCTTCGGCGGAACAACTTTGCCCAGCCGATGCA TGGTGAAGACGTATTGAGCCATGGAGAACCTAGGGTCAGTGACTGATGAATGATTGGAGCGCAGGCGATGCCCGGCCAGGCCATGCGCGTCGTTCGTTTG ATGGGTATCAAGGCGGCGCGCTGAAAAAACCTAGGAGCTGGAACGCTCCCGCGTAACCGGCAAAGCTACCTCATTGACAGAAGGCAGTCCAGCCGAGCGG GGCTGGCACTTCGCCACAACTCAAGGCATGCTAGCCGCCCTTCGGGCGTCCGGCTTATAGTGCACGCCGCGCCAGTCCAGCCAAACCGCAGGATTACAGT
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| DNA Sequence for Gene |
>G368_RS0123105
TTGTCCAATGTCACTCCGCCACCGTCCGCGAGCGTGCTCAACCCTGGGCTCGGCTCGCCCCTGCGCGGAAGCTTGAAGGGCGCGCTGGCGACGCTCGTGC TGTTGCTGCTCGCATTGCTGTTCTGGCAGTTGCTGGATCAACTGCGCGAAACCCAGAAAAACCAGCGCCAGTACACCATCGACTACACCGCCGACCTGGC TTCGCAAGTCAGCCTCAACATGGCGCTCAACGCCCAGATCGCCCTTAATCTGCTACCGATCGTCGAACAACCGCAAAGCGCCGACGAACAGCAGGCATTG CTGCGCAAACTGCAACAGTCGCTGCCCGACCTGCGCAGCCTGGCGCTGCTCAGCCCTTCCGGGAAAGTCCTGAGTGACAGCGCCGTCGACAGCCAGGACG CCAACTACCTGAGCGAACTGGTCCAGCGCAGCCGCGCCCAGGCCCACTATTTCAGCAATGCCGATGACGGCTCGGTGGTGCACCTGCTCCTGCATCAGGC CAGCGGCAGCACTCGCGGCTACTGGGCCCTGCGCCTGACACCGACATTTTTCTCTTCATTGACCAAACAGGGCGACGCCGGCATTCGCCCCCTGTGGCTG GTGGAAAACCGCATCAATCATCAGATCATCAGTCGCGATGACGCCCTGGCTTCAGCCAAACCCGCGGTGCTGACACCCGACGAACTGACCAACAGCGTGT TGACCGTCCCCCTGAGCAGCAGCGACTGGCAACTGCGCGGACTGTTCGACCGGCAACGGGTGATCGAACAACTGCTGCCGGCATTCATCGGCAAATGCCT TCTGGGCCTGGCCTTCTCACTGTTACCGTTCATCGCTTTGCTGAACATTCGTCGCCGCCAACGCCAACTGCATGAAGGCCGCCGACGCTATCAGGACATC TTCGAAGGCACCGGCGTTGCCCTGTGCGTGCTGGACCTGTCCGGGCTCAAAAGTTTTTTCGACAAGGAGCAACTCACCAGCAGCGAGCAGCTGAGAACCT GGCTCGAGATACCGGAGCAACGCCAGCAACTGTTGCAGGAACTGCGCATCACCGAAGTCAACCAGGTCGCCCTGCAACTGCTCAACGTCAATTCCTGCGA TCAGGCCTGGAAACTACTGATCAACGGCTGCCCACTGGACTGCACGGCCATCGGCAATCAAGTGCTCGAAGCGGTGCTCCACCAGCAGAAACAGCTTGAG CTGGAAATCAAGCTTCAGGATGCCAATGGCCGCGACCAGCACTTGTGGCTCGTGCTGCGCCTGCCGGAAGATCAGCCCGACTATAGAGCGGTGATCCTGA GCATCAGCGACATCACCAGCCGCAAACTCATTGAGCTTTCGCTGCTGGAGCGCGAAGGATTCTGGTCCGATGTGGTGCGTACCGTGCCGGATCACCTGTA TGTGCAAGACGTGATCAGCCAGCGGATGATCTTCAGCAACCATCACTTGGGGCAGACGCTGGGTTACAACCGCACCGAGCTGCACCAGATGGGCGAGTAC TTCTGGGAAATCCTCTTGCACCCGGAAGATGCCGACTACTACCACCGCTCTCGCCAATCTCAGCGTCAGGCGGGTTACACCCAATTGCTGCAGTGCCAGC TGCGCTTCCGTCATCGCGATGGCAAATGGCGGCGTTTCGATATTCGCGAACAGGCCCTGGCGCGGGACAAGCACGATCAGGTCACGCGCATCATCGGTGT GGCCAAGGACATCACCGAGCAGATCGAAGCCAGTGAATCCCTGCGCGACAGCGAGCAGCGCTACCGGATGCTCGCCGAAAGTATCAGCGACGTGATTTTC TCCACTGACAGCAAGATGGCGCTCAATTACGTCAGCCCTTCGGTGCAAGCGGTGCTGGGCTTCGACGCCGACTGGATATTCCAGAACGGCTGGCAATCGA CCATCGCCAACCCGCAACAACTGAGCGGCATCTACAGCCTGATGGACCGGGTCAGCAAAGCGCTGGATAAACCCGATCAACTGACACTGCTGCGCAGTCA GGTGCAGACCCAACTGTTTTTGTTCGACTGCCTGCGGGCCGACGGACGCAAGATCCCTATCGAGTTGCGTCTAGTTTTGGTCTGGGACGAACACGGCGCC TTCGAAGGTGTGCTCGGGGTCGGTCGCGACATCAGCCAGCAACGCCGGGCCGAGAAAGACCTGCGCATGGCGGCCACGGTATTCGAGCACTCCACCTCGG CGATTCTGATCACTGACCCGGCCGGCTACATCGTCCAGGCCAACGAGGCCTTCAGTCGAGTCAGCGGCTATGCGGTGTCCCAGGTGCTCGATCAGTTGCC GAACATGCTCACCGTCGACGAGCAGCAGGAAACTCATCTGCGCTACGTGCTCAAGCAATTGCATCAGCACAGCACCTGGGAAGGCGAAGTCTGGCTCAAG CGTCGCAACGGCGAGCACTATCCGGCCTGGGTCGGGATTACGGCGGTGCTCGACGACGAAGGCGATCTGGCCAGTTATGTGTGTTTCTTCAGCGACATCA GCGAACGCAAGGCCAGTGAGCAACGGATTCACCGCCTCGCCTATTACGACGCCCTGACCCACCTGCCCAACCGCACGCTGTTCCAGGATCGCCTGCACAC CGCGCTGCAATCGGCCGAACGGCAGAAGTCCTGGGTGGTGCTGATGTTCCTCGACCTGGACCGTTTCAAGCCGATCAACGACTCCCTGGGTCATGCCGCC GGCGACCGCATGCTCAAGGAAATGGCCACGCGCCTGCTCGGCTGCGTCGACGATGACGACACCGTGGCGCGTATGGGCGGTGATGAGTTCACATTGCTGC TGCAACCCCGGGTCAACCGCGAGATCGCGCTGAACCGAGCCATTCACGTGGCCGAACAGATCCTCGCCAGCCTGGTGAAGCCGTTCGTGCTCGAAGGCCG CGAGTTCTTCGTCACCGCCAGTATCGGCATCGCCCTGAGTCCTCAGGACGGTAGCGAACTCAGTCAGCTGATGAAGAACGCCGACACCGCGATGTACCAC GCCAAGGAACGCGGCAAGAACAACTTCCAGTTCTATCAGGCCGACATGAACGCCAGCGCCCTGGAGCGTCTGGAGCTGGAAAGCGACTTGCGCCACGCCC TGGAACAAAACGAATTCGTGCTGTACTACCAGCCGCAGTTCAGCGGCGACGGCAAACGCCTGACCGGCGCCGAAGCCCTGCTGCGCTGGCGCCATCCGCG CCGCGGTCTGGTGCCGCCGGGGGACTTCATTCCGGTGCTCGAAGAGCTCGGGCTGGTGGTGGATGTCGGCGACTGGGTGATCGGTGAGGCCTGTCGTCAA CTCAAGACCTGGCACCAGGCCAAGGTGCGGGTGCCGAAGGTCTCGGTGAATATTTCGGCCCGGCAGTTCTCCGACGGGCAGCTCGGCACGCGGATCGCCA CCATCCTCAGGGAAACCGGCCTGCCGCCGGCGTGCCTGGAGCTGGAGCTGACCGAAAGTATCCTGATGCGCGAAGTCAGCGAGGCGATGCAGATCCTCGC CGGACTGAAAAACCTCGGCCTGAGCATTGCGGTCGACGACTTCGGCACCGGTTATTCATCGCTCAACTACCTCAAGCAATTCCCGATCGATGTGCTGAAA ATCGACCGCACCTTCGTTGATGGCCTGCCGTCGGGCGAGCAGGATGCGCAGATTGCCCGGGCGATCATCGCCATGGCCCACAGCCTCAATCTGGCGGTAA TCGCCGAGGGTGTGGAAACCCATGAGCAACTCGACTTCCTGCGCGAGCACGGTTGCGATGAGGTTCAGGGCTACCTGTTCGGCCGCCCGATGCCGGCCGG CCGGTTCGAAGCGCAGTTCAGCAATGATGCGTTGTTCATGTTCGACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCTCTTGTGGCGAGGGAGCTTGTCGGATCGCCGCACCGTCCCGCTCGAGTGCGTAGCGCTCGCAAGATTTGGGGCCGCTTCGCAGCCCAGCGGGAGCA AGCTCCCTCGCCACAGACATTGAAAATCCTGCGCATGAACACCACTTGTCTGCGACATGATGTCCTTTCATATGCCATCTAAAAGCGGTTGGGTTAGAAT GCCTCCCTTTTCTGCCCCCGATCCTTGAGGACCGCCATGTTCAGCCGTGATTTGACTATTGCCAAGTACGACGCCGATCTCTTTGCCGCCATGGAGCAAG AAGCTCAGCGCCAGGAAGAGCACATTGAGCTGATCGCTTCGGAAAACTACACCAGCCCTGCGGTGATGGAAGCTCAAGGCTCGGTACTGACCAACAAGTA CGCCGAAGGTTACCCAGGCAAGCGCTACTACGGTGGTTGCGAGTTCGTCGACATCGTCGAGCAGCTTGCAATTGATCGAGCCAAGGAACTGTTCGGCGCC
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MSNVTPPPSASVLNPGLGSPLRGSLKGALATLVLLLLALLFWQLLDQLRETQKNQRQYTIDYTADLASQVSLNMALNAQIALNLLPIVEQPQSADEQQAL LRKLQQSLPDLRSLALLSPSGKVLSDSAVDSQDANYLSELVQRSRAQAHYFSNADDGSVVHLLLHQASGSTRGYWALRLTPTFFSSLTKQGDAGIRPLWL VENRINHQIISRDDALASAKPAVLTPDELTNSVLTVPLSSSDWQLRGLFDRQRVIEQLLPAFIGKCLLGLAFSLLPFIALLNIRRRQRQLHEGRRRYQDI FEGTGVALCVLDLSGLKSFFDKEQLTSSEQLRTWLEIPEQRQQLLQELRITEVNQVALQLLNVNSCDQAWKLLINGCPLDCTAIGNQVLEAVLHQQKQLE LEIKLQDANGRDQHLWLVLRLPEDQPDYRAVILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNRTELHQMGEY FWEILLHPEDADYYHRSRQSQRQAGYTQLLQCQLRFRHRDGKWRRFDIREQALARDKHDQVTRIIGVAKDITEQIEASESLRDSEQRYRMLAESISDVIF STDSKMALNYVSPSVQAVLGFDADWIFQNGWQSTIANPQQLSGIYSLMDRVSKALDKPDQLTLLRSQVQTQLFLFDCLRADGRKIPIELRLVLVWDEHGA FEGVLGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLTVDEQQETHLRYVLKQLHQHSTWEGEVWLK RRNGEHYPAWVGITAVLDDEGDLASYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSWVVLMFLDLDRFKPINDSLGHAA GDRMLKEMATRLLGCVDDDDTVARMGGDEFTLLLQPRVNREIALNRAIHVAEQILASLVKPFVLEGREFFVTASIGIALSPQDGSELSQLMKNADTAMYH AKERGKNNFQFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPGDFIPVLEELGLVVDVGDWVIGEACRQ LKTWHQAKVRVPKVSVNISARQFSDGQLGTRIATILRETGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLK IDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLREHGCDEVQGYLFGRPMPAGRFEAQFSNDALFMFD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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