Pseudomonas sp. 45MFCol3.1, G368_RS0122580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00007.7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGGACCCTGGCGGCGTTGTGTGACGGCGGTCGGATCGGGCTGGAAGATTTGCCGGCGATGATTCGTCAGGCCCGACCGGTGACGGTGGCGACGATTGA AGAGCCATCCGAATATCCGCTGGACGACGCCGAGCGGCTGGCATTGCTCAGCGCACTGGAACAGCAGCGCTGGCACATGACCCACACCGCCGAACAGCTG GGCGTGAGCCGCAATACGCTCTACCGGAAGCTGCGCAAACACGGCATCGCCCGATAAGCGTTTTTGTGGCGAGGGAGCTTGCTCCCGCTGGGTTGCGAAG CAGCCCCAAAACCAGCCAACGTGGTGTATTAGCCGGATCACGGCTGCCAACGTTACGACTGCTGTGCAGCCGAGCGGGAGCAAGCTCCCTCGCCACAAAA AAACGCGCTCGATCAGCCAAGCGGTTGTGTCACGTTCAGCTAAAGAGTGCGATTTTCCCCTCCCTACGCTAACCTGCGGCCATGTTTTACGAGGTCGACT
|
|
| DNA Sequence for Gene |
>G368_RS0122580
ATGCACATTCATATTCTTGGTATTTGCGGCACTTTCATGGGTTCGATGGCGGTTCTGGCCAAAGAGCTGGGCCATCGCGTGACCGGCTCCGATGCCAACG TCTATCCGCCGATGAGCACTCAGCTGCAAGCCCAGGGCATTGAGTTGACCCAAGGTTACGACCCGGCGCAGCTTGATCCGGCCCCGGACCTGGTGGTGAT CGGCAATGCCATGTCCCGCGGCAACCCGGCCGTCGAGTACGTGCTGAACAAAGGCCTGCCGTATGTCTCCGGCCCGCAATGGCTGGCGGATCACGTACTG CAAGGCCGCTGGGTGCTGGCGGTTGCCGGCACGCATGGCAAAACCACCACCAGCAGCATGCTCGCCTGGGTCCTGGAACACGCCGGTATGAGCCCGGGTT TCCTGATCGGCGGCGTGCCGCAGAATTTCTCGGTGTCGGCGCGTTTGGGCGATACGCCGTTCTTCGTGATTGAAGCCGACGAATACGACAGTGCGTTTTT CGACAAGCGCTCCAAGTTCGTTCACTACCGCCCGCGCACGGCGATCCTGAACAATCTGGAGTTCGATCATGCGGACATCTTCCCTGATCTGGCGGCCATC GAGCGACAGTTCCACCATTTGGTGCGGACCATTCCGAGCGAAGGCCTGGTGATCCATCCGACCACAGAGCCGGCCTTGCAGCGCGTGATCGAGATGGGCT GCTGGACCCCGGTGCAAACCACCGGCGCGGGCGGTCAATGGCAGGTCAAACTGCTCAGTGAAGATGGCTCGAAGTTCGAAGTGATGTTCGACGGCGTCGC TCAAGGCGTGGTCGAGTGGGACATGACCGGTCAGCACAATGTCGCCAACGCCTTGGCCACCCTGGCCGCCGCGCGTCACGTCGGCGTCGTGCCGTCGATG GGCATTGCGGCACTGAGCGCGTTCAAAAGTGTGAAGCGCCGGATGGAGAAAGTCGCGGAAGTCCGTGGCATCACCATCTACGACGACTTCGCCCACCACC CGACCGCCATTGCCACCACCCTCGACGGTCTGCGCAAGCGCATCGGTGATGCGCCGCTGATCGCGATCATCGAGCCGCGCTCCAACTCCATGAAGCTCGG TGCTCACCGCGATGGCTTGCCGGAAAGCGTGGTCGATGCCGATCAGGTGATCTGGTATTCGCCGGCCAACCTCGGTTGGGACCTGGGTGCCACGGCGGCA TTGTGCACCGTGCCGTCGATTGTCAGCGATTCGCTGGAAGGCATCATCGAGCGCGTGAAGAGCCAGGCCCAGCCCGGCACTCACGTGGTAATCATGAGCA ATGGCGGCTTCGGCGGCCTGCACGGCAAACTGGCCGAGGCGCTGCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACAATGGTCCGGAACGCATCACGCTGGCGATGACCGGCGCTTCGGGCGCCCAGTACGGCTTGCGCCTGCTCGACTGCCTGGTGCGTGAAGACCGCGAGGT GCACTTCCTGATTTCCAAGGCCGCGCAACTGGTGATGGCCACCGAGACCGATGTCTCGCTGCCGTCCAAGCCGCAGATGATGCAAGCCTTCCTCACTGAA TACACCGGTGCCGCCGCCGGGCAGATTCGGGTGTACGGCAAGGAAGACTGGATGTCGCCGGTGGCATCGGGTTCCGGCTCGCCAGCGGCGATGGTGGTGG TGCCGTGTTCCACCGGAACCTTGTCGGCTATCGCGACCGGTGCCTGCAACAACTTGATCGAGCGGGCAGCCGACGTGACGTTGAAGGAGCGCCGCCAGCT GATTCTGGTACCGCGCGAGGCGCCGTATTCGAGCATTCATCTGGAGCACATGCTCAAGCTGTCGAACATGGGCGTGACGATTCTGCCGGCATCGCCAGGC
|
|
| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHRVTGSDANVYPPMSTQLQAQGIELTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGDTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIEMGCWTPVQTTGAGGQWQVKLLSEDGSKFEVMFDGVAQGVVEWDMTGQHNVANALATLAAARHVGVVPSM GIAALSAFKSVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPESVVDADQVIWYSPANLGWDLGATAA LCTVPSIVSDSLEGIIERVKSQAQPGTHVVIMSNGGFGGLHGKLAEALQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|