Pseudomonas sp. 45MFCol3.1, G368_RS0119465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGATTAACGAACGCTTGCCGTTCAGGAAAGCTTTCACGATGTCGGTGATTTGAGCATCGTTGCGTTTTGCCTTGTAAGTGTCGATGGTCATGTGTTTC GCGAGGCTGGGGGCCGCGCGTTGAATAGCCTTGAACCCTCGTCGATCCTGGGCGGTGGTGCGAAGGCTGAAGTTTTCGATATCCGGGCCGTCGTCGAGCC CCAGAGCGTGTCTGGCGCGAAATTCTTCGTCTGCCGGTGACAGGGCCGGTTGATCAGGTGAAGGTGAAGACGTCTCTGTCATGTTGCACTCCTTTGAAAG GGATCCCGTAACGGATAGGGGGAGCCCGAAGTGCCCAGTAAACAGATCTCCAGACTGGCCTTGGCGGTATATATCTATATGGGGCGCACGTGTACGGCGT TGAGGTCGATCCTCTGCTTGCCGGTTTCGAGAACGCACCCTAGTCTAGCTGTAGCGATCACGTTGGATGATGATCTGGCAGTGCTAAAACAAGGGACCTC
|
|
| DNA Sequence for Gene |
>G368_RS0119465
ATGAATCAAGCGCGGACTCTCGGAACGCCACGGCTGTTGGGCATCGTCTGGCCATTTATCGCCGTTGTGTTGTTTCAGGCACTGTTGGGCGGCGTCAGTC TTTACGTTCTTTCGGCGGTTCGTGGCTACGTCGGCGGTGAGAGCCTGTGGTCCAAGGGCCAGAAAGACGCCATCTATTACCTTAATCTCTACGCCGACAG TCGTGACGAGACGATTTTTCTCAAATACCAGACCGCGATTGCCGTGCCTCAGGGCGGCCATGAGTTGCGTATGGCGCTGGATCATCAGCCACCGAATATC GAGGCCGCGCGGCTCGCGATCCTCAAGGGCGGCAATCACCCGGACGACGTCCCCAGCCTGATTTGGCTGTACCTCAATTTCCGGCACATCAGTTACCTGG AAAAAGCCATCGAGCTCTGGACGATCGGTGACGCGTACCTGGTGCGGCTCGATGACGTCGCGCGGGAAATGCATCAGGGTATCGTCGATAGCCAGGCCTC CGATGCCGACATCAAGCGCTGGAAGGCGCAGATTTTGGCCATCAACGATGGCGTGACGCCCCCTGCCAAAGCGTTCAGCGATGCCTTGGGCGAGGGCTCG CGCATGATTCTCCGGTTGCTGCTGGCGACGAACCTCGCGACCGCGCTGGGCCTGATCGTGCTGGCCTTGCTGCGTACCCAAAAGCTGCTCGAGCAGCGCC ATGCCTTCGCCGATGCCTTGCAGTTGGAGAAAGATCGGGCGCAGATCACCCTGCAATCGATTGGCGACGGGGTGATCACCACCGACGTCGAGGGCGCGAT TGCCTACATGAACCCGGCCGCCGAGGCCTTGACTCACTGGAAAGCCGAGCAGGCAACGGGGTTGCCATTGGCGGCGCTGTTCAATCTGCTGGACGAGAAC GCCCAGGCCGACGGTTTTACCTTGATCGAGCACATTTTGAGCGGCCAGCTCAGCGGCGGCAGCGAACATTCCAAACTGATCCAGCGACTGGATGGCAGCA CGGTTTCGGTGACCCTGGTCGGTGCGCCGATCCGCAACGCGGGCAAGGTCAGTGGCACCGTGCTGGTGCTGCATGACATGACCCAGGAGCGGCAGTACAT CGCCAATCTGTCCTGGCAGGCGACCCATGACGCCTTGACCGGGCTGGCCAACCGCCGCGAGTTTGAATATCGCCTGGAACAGGCCCTGCACGGCCTGACG CGACAAGCGGGGCGTCATGCCTTGATGTTCCTCGATCTGGATCAATTCAAACTGGTCAACGACACCTGCGGTCACGCTGCCGGCGATGAGCTGTTGCGGC ATATTTGTGCGTTGCTGCAGTCAGGTTTGCGCGAAGGCGACACCTTGGCCCGATTGGGTGGCGACGAGTTCGGCATTCTGTTGGAAAACTGTGCGCCGGA AGCCGCCGAGAAAATCGCCGAAGTCCTGCGCCAGACCGTGCAGAACCTGCACTTTGTCTGGAAAGGCCGGCCGTTCGTGACCACGGTGAGCATTGGCCTG GTGCACGTCACTCAGAGTCCGGCCACCCTCGAGGCCTCGCTGCGAGCCGCTGATATGGCCTGTTACATGGCCAAGGAAAAGGGCCGCAACCGGGTTCAGG TCTATCACGCCGACGATTCGGAGCTGTCCCTGCGCTATGGCGAGATGGCTTGGGTGCAGCGCCTGCACATGGCGTTGGAGGAGGACCGCTTTTGCCTGTA CTCCCAGGAAATCGCGCCTCTGGGTCTTGGCGAGCGGGACGGCGGACATATCGAAATCCTGCTACGCCTGCATGACGAAGCCGGGCGCATGATTCTGCCG GACAGTTTCATTCCGGCCGCCGAGCGTTATGGTTTGATGACGTCGCTTGACCGCTGGGTGGTGGAGAACGTTTTCAAGGTCATTGCCCAGGCCATCGCCC AAGAGGGCGAAGAGCCGCTGGCCATGTGTGCGATAAATCTGTCAGGTATTACTATCGGAGATGAGGCGTTTCTGGACTTCCTTCGTGAACAGTTTGTTGC ATATTCAATTCCGCCTGAAATGATTTGTTTTGAAATTACAGAAACCAGCGCGATTTCCAATTTGCCTAGCGCAATTAGATTTATTAATGAACTCAAAGGC TTAGGTTGCCACTTCTCATTAGATGACTTCTGTGCCGGTATGTCCTCATTCGCTTACCTGAAACATTTACCTGTAGACTTCCTGAAGATCGACGGGAGTT TCGTAAAGGATATGCTGGACGACCCGATTAACCGCGCCATGGTCGAAGTGATCAATCACATCGGGCATGTCATGGGTAAGCGCACGATTGCCGAGTTCGT TGAAACACCTCAGATCGAGCAGGCATTGCTGGAGATCGGGGTGGATTACGCTCAAGGGTATCTGATTGAACGCCCGCATCTGTTTACCTGCGACAGTTTA CAAAGTCGTCCTGCCAGACCCCGGCCTTTGTTATTCAAGGCGCCCGGCACATTCCGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAGCTCCTGTCGATCTTGAAATCACAATCAAAAGGAGCGCGACAGTGATCGACACATTCAACAGAACCGGACCCCTCATGGAAGCTGCAAGTTACCCCGC CTGGGCTCAGCAATTGATTCAGGATTGCAGTGAGAGCAAGCGCCGCGTCGTCGAACATGAACTGTACCAGCGGATGCGCGATAACAAGCTCAGCGCAAAA ACCATGCGTCAGTACCTCATTGGTGGCTGGCCGGTGGTCGAACAGTTCGCCTTATACATGGCACAGAACCTGGCCAAGACCCGTTTTGCACGCCACCCTG GCGAAGACATGGCGCGTCGCTGGCTGATGCGCAATATTCGCGTCGAACTGAACCATGCCGATTACTGGGTGCACTGGAGCCGTGCTCACGGTATCAGCCT GGAAGATCTGCAGGCGCAACAGGTTGCGCCTGAACTTCACGCCTTGAGTCACTGGTGCTGGCACACCAGTTCGTCGGACTCGCTGATCGTGGCTATCGCC
|
|
| Amino Acid Sequence |
>membrane protein
MNQARTLGTPRLLGIVWPFIAVVLFQALLGGVSLYVLSAVRGYVGGESLWSKGQKDAIYYLNLYADSRDETIFLKYQTAIAVPQGGHELRMALDHQPPNI EAARLAILKGGNHPDDVPSLIWLYLNFRHISYLEKAIELWTIGDAYLVRLDDVAREMHQGIVDSQASDADIKRWKAQILAINDGVTPPAKAFSDALGEGS RMILRLLLATNLATALGLIVLALLRTQKLLEQRHAFADALQLEKDRAQITLQSIGDGVITTDVEGAIAYMNPAAEALTHWKAEQATGLPLAALFNLLDEN AQADGFTLIEHILSGQLSGGSEHSKLIQRLDGSTVSVTLVGAPIRNAGKVSGTVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHGLT RQAGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLREGDTLARLGGDEFGILLENCAPEAAEKIAEVLRQTVQNLHFVWKGRPFVTTVSIGL VHVTQSPATLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRYGEMAWVQRLHMALEEDRFCLYSQEIAPLGLGERDGGHIEILLRLHDEAGRMILP DSFIPAAERYGLMTSLDRWVVENVFKVIAQAIAQEGEEPLAMCAINLSGITIGDEAFLDFLREQFVAYSIPPEMICFEITETSAISNLPSAIRFINELKG LGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERPHLFTCDSL QSRPARPRPLLFKAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|