Pseudomonas sp. 45MFCol3.1, G368_RS0118555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCGCGGCCTACACGCCTGTTCCCTCTTTCACACACAATTTACGCACAGGTTTATCCACAGGTAGTACGTTGCAACACCCTCCAAAACGCATTATCTTG TACCTCGGCGCAAAAAAAACCCTACATGTAGGGTTTTACGCCAAAAACCAAACACAAACCGGACACCGATTTCAAGCGCTTTTATTGCCTCTTTCCGGTT GAACCAAACGTATTTTCGAAAGACCAAACCGCGTGTGCGGATGGCTACTGTTTTTAAGCCCGAAACGGCGATAACGGTACGGGTGTTGCAGTCATTTACT GCCACTCAAAACGGAATTCGGTTTCAGGCCCAAGGCGTGACACCAAAGACTTCGGCATGGAAGCGGCGCCCAATAGCCCCCTTCCTGATCTGTCCCGAAG TTGGTATGCCCGGCCCTCGCCGGTTGTAGTGCTTCAGGACAGAACGGTGGGCACCGTGATGGTGCCCAAACAAACATAGAGAATGTGGAGATACCCCCCC
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| DNA Sequence for Gene |
>G368_RS0118555
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGGCACCTTGCCGCAGGCCACCGATTCGAATTCGGATCTGTCCGCCACCGCGCCTGGCCAACTGCGCG TGATCAAGCGTAACGGCACTGTCGTCCCTTACACCGATGACAAGATCACCGTCGCCATCACCAAAGCGTTTCTCGCAGTTGAGGGCGGCACCGCTGCCGC TTCGTCGCGAATCCACGACACCGTTGCCCGCCTGACCGAACAAGTCACCGCGACTTTCAAGCGTCGCATGCCTTCGGGCGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTCGCCCGCGACTATGTGATCTACCGTGACTCCCGCGCCAAAGAGCGCGCAG CGCACTCCCCTGCCGAAGAAGCCGTCAACGCTCACCCATCGATCCGCATCACCCGCGCCGATGGCAGCCTCGCACCGCTGGACATGGGTCGTCTGAACAC CATCGTTACCGAAGCGTGCGAAGGCCTGGAAGAAGTCGACGGCGAGCTGATCCAGCGCGAAACCCTGAAAAACCTGTACGACGGCGTGGCCCTGACCGAC GTCAACACCGCCCTGGTGATGACCGCCCGTACGCTGGTCGAGCGTGAGCCGAACTACTCGTTCGTGACCGCCCGCCTGCTGATGGACACCCTGCGTGCCG AAGGCCTGGGCTTCCTCGGTGTCGCCGACAGCGCGACCCACCACGAAATGGTCGACCTGTATGCCAAGGCACTGCCTGCATACATCGCCAAAGGTATCGA ATTCGAATTGCTGAACCCGGTTCTGGCGTCCTTCGACCTGGAAAAACTCGGCAAGGCGATCAACCACGAGCGCGATCAGCAGTTCACGTACCTGGGCCTG CAAACCCTGTACGACCGTTACTTCATTCACAAGGACGGTATCCGCTTCGAACTGCCACAGATTTTCTTCATGCGCGTGGCCATGGGCCTGGCGATCGAAG AGAAGCAGAAAGAAGACCGTGCGATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGTCCTCGACCCCGACCCTGTTCAACGCCGGTACCCTGCG TCCACAGCTGTCGAGCTGCTACCTGACCACCGTGCCGGATGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGTTGTCGAAATTCGCAGGC GGCCTGGGCAACGACTGGACTCCGGTTCGGGCGCTGGGTTCGTACATCAAGGGCACCAACGGCAAATCCCAGGGCGTCGTGCCGTTCCTGAAAGTGGTGA ACGACACCGCCGTCGCCGTTAACCAGGGTGGCAAGCGCAAAGGCGCTGTCTGTGCCTACCTGGAAACCTGGCACATGGACATCGAAGAGTTCATCGAACT GCGCAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCAGACCTGTTCATGAAGCGTGTCTTCGATGATGGCAAG TGGACCCTGTTCTCGCCGTCCGAAGTACCGGACCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGTTACGAGTACTACGAAGCCCTGACCGAGTACC CGGGCAAGGTCAAGCTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAAATGCTGTCCATGCTGTTTGAAACCGGCCACCCATGGCTGACCTTCAA AGACCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTTCACAGCTCGAACCTGTGCACCGAGATCACCTTGAACACCAACAAGGACGAGATC GCTGTTTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTGCAACGCACCGTGAACACCGCCGTGCGCA TGCTCGATAACGTGATCGACATCAACTACTACTCGGTGCCGCAAGCGAAGAACTCCAACTTCAAGCACCGTCCGGTCGGTCTGGGCATCATGGGCTTCCA GGACGCTCTGTACCTGCAGCACATCCCTTACGGTTCCGACGCTGCCGTCGAGTTCGCCGACAAGTCGATGGAAGCGGTCAGCTACTACGCGATCCAGGCG TCCTGCGACCTGTCTGACGAGCGTGGCGCCTACGAGACGTTCCAGGGTTCGCTGTGGTCCAAAGGCATCCTGCCGCTGGATTCGCAACAGATCCTGATCG AGCAGCGTGGCCAGAAGTACATCGACGTTGACCTGAACGAAACCCTGGACTGGGCACCGGTTCGCGCCCGTGTACAGAAAGGCATTCGTAACTCCAACAT CATGGCCATCGCACCGACCGCAACCATCGCCAACATCACTGGCGTGTCGCAGTCGATCGAACCGACCTACCAGAACCTCTATGTGAAATCGAACCTGTCG GGCGAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTGAAGGCTCGCGGCCTGTGGGACTCGGTCATGATCAACGACCTGAAGTACTACGACGGTT CGGTGCAGCAGATCGAGCGCATCCCGCAAGAACTCAAAGAGCTCTACGCGACCGCCTTCGAAGTGGACACCAAGTGGATTGTCGACGCCGCCAGCCGTCG TCAGAAGTGGATCGACCAGGCTCAGTCGCTGAACCTGTACATCGCCGGCGCTTCGGGCAAGAAACTGGACGTGACCTACCGCATGGCCTGGTACCGTGGT CTGAAAACCACTTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGTAAGCTGAACGCTGTTTCCAGCGGCGGCAACC ACGGTGACGACTCGGTCCTGGCAGCCCCAGCCGGTCCAGCTCCAGTGCCGAAGGCTTGTGCCATCGACGAGCCGGATTGCGAAGCTTGCCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGAGCCGGTAGGCGCTCCAGGGCGCTTACCTGAAACCCCCGATGAGCCTCTGGCTGGTCGGGGGTTTTCTTTTGCCTGCCTTTAAGGTCAAAGGATCG CAGCCTCGTTTCACTCGACAGCTCCTACAAGGGGCGCGCGATTTCCTGTAGGAGCTGTCGAGTGAAACGAGGCTGCGATCTCTTGATCTTGATTCTGCAA GACAAAAAAAACCCCTCGTGAGAGGGGTTCTTTATGCAGCGCTATACAGCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTCTGGGTGGAGATG GTCTTGGCGTTCGCCTGGTAGTTGCTCTGCGCCTTGATCAAATCAACCAGTTCGTTGGTCAGGTTGACGTTGGACTCTTCCAGGGAGTTGGACACGACCG AACCCAGAGTACCGGTTTTCGGCGCATCGACACCGGCCACGCCGGAAGCGAAGGTTTCTTTCCAGCGCGTACCGCCAATTGGCTGCAAGCCTTGCTCGTT
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQGTLPQATDSNSDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDSRAKERAAHSPAEEAVNAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLEEVDGELIQRETLKNLYDGVALTD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMVDLYAKALPAYIAKGIEFELLNPVLASFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEI AVCNLGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQA SCDLSDERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLS GEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRG LKTTYYLRALAATSTEKSTINTGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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