Pseudomonas sp. 45MFCol3.1, G368_RS0116450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGCGGCCTTCACCGCCCTTGAGCAGCGTGCCGACCCGTTCCTTCATCTCCCGCGCGGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCACG GATGCCGCAGCTCTGGATCAGATGCGCAATTTTGCGGGTGATCACGCTGGTCTTGCCGGAGCCTGCGCCGGCGAGCACCAAAAGAGGGCCGCCGACGTAG CTCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATACGAAATCAGGGAGTCGTTAGCGAAATGGGCCGGCATTTTAACAGGCTCAGAGAATTGTGCT GCTCTCTCCGACTTGTGACGCAACACGCGATCTCTATTTGCCGGTTTTGATACTTTCACGCAGGATGCGCAATGAATTCGCGTCTAATGTACGTATTCAA GACTCGAAGTCGTGTTTGATAACCGATGATATTGGGTCATTGGTTACCCGAGCGGCATAATGCGCGCCGCCTACATCTTTGCAGAGTCTAGGGAGCTAGC
|
|
| DNA Sequence for Gene |
>G368_RS0116450
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCCAAGAGCCGGCGTGGGCAGCGTTGTTGCGCGAGTGTCTGGCTCCAATGGGGAGTTCGG CAGTGCTGCTCAGCGCGCCGAGCTGGGAGTCGGTCAGCAACCTGTTCGATGACAACCGCAGCGCGGTGTTGTTGACGATTCCTGCTCTGCAGCCGGCACC TGGCCGTTGCAGCCTGCCGACGGTGTTGCTGCTCGAACACGAGCCGCTGGCGCCGCCCGACGGTGTGAGCGACTGGCTGGTGCGCAATCTGCTGGATCCC GGCATGTTGCGCCGCTGTCTGCGTCACGTGCGTGAGCGCGGGGTGCTGGAAAACACCTTGCAGCGCCTGGCCGAGCAGGATCCGCTGACTGGCATCGCCA ACCGTCAGGGTTTCCAGACCTTGCTGGCGGCGCGTCTGGCGGACAACGACGGCCGCGGCCTGGCCCTCGGTCACCTCGACCTCGACAACTTTCGACACGC CAACGACGCCCTCGGCCATCAGGCAGGCGATCGGTTGATTCTGCAAGTGGTCTCGCGGCTGAAAAGCCAGCTGGAGGCCGGCGATCAACTGGCGCGGCTG GGCAGCGATGAGTTCGCCCTGCTGATCGACACCCGCCGCGCGCCTCAGCGCGCTGAATGGATGGCCGAACGGATTACCGAAGCCCTGTCCGAACCCTACT GGATCGACGGCGAAAGCCTGTTGATCGGCTCCAGTCTCGGCATTGCTCACGCCCGGGCGCAGGCCGGCGCCGACCCGCTGATGTGGCATGCGCACATCGC CATGCAGCAGGCCAAGAGTACTCAAGGCTGCACCTTCCACATCTTCAACGAGCGGATCAATCGCAATGCCCGCAGCATCGCCGACCTTGAAAGCGAGCTG CGCCGGGCCTTGCGTCGCGATGAGCTGGAGTTGCATTACCAGCCACGCCTGAACCTTGCGGACGGCCAGATCGTCGGCCTCGAAGCCTTGGTGCGCTGGC GTCATGGCGAACGCGGTTTGCTGCCCCCCAGCGAATTCGTGCCACTGGCCGAGCAAAGCGGCTTGATCGTGCCGCTGGGTTACTGGGTGATTTCCCGGGC CCTGCGGGACATGCAGGCGTTGCGCGAACGGGGTCTGCCGGCGCTGCACATGGCGATCAACCTGTCGTTCCGGCAGTTTCAGGACAGCCAACTGCTGACG ACCCTGAGCCGGCTGATTGCCGAGCGCGGTGTCGAGGCGCAGTGGCTGGAATTCGAACTGACCGAAACCGCGGTGATGCGTCGCAGTGACCTGGTCAAGC AGACCATGGACGCCCTCGGGCGGCTCGGTGTGCGCTTCTCGCTGGACGATTTCGGCACCGGGTTCTCATCATTCGTGCACCTGAACAGCCTGCCGATCGC CTTGTTGAAGGTCGACAAGAGCTTTGTCGGCGGCATGGAAGAGCGGGAAGAGAATCGCAAACTGGTGCACGCCATGATCAACCTGGCGCACAACCTCAAC CTCGAAGTGGTTGCCGAAGGGGTGGAAACACCGGAGCAGCTGGATTTGTTGCGCGGGTTTGGGTGCGATCAGGTGCAGGGGTATCTGATCAGCAAGCCGT TGCCGTTGGCAGAATTGGTTGAGTATTTGACCTTCGGTTCCAGCCAGCAGCCAGCGCTGGAAGTCGTGAGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCACAAACAACTGTGGGGTGCTTTTGTGGCGAGGGAGCTTGCTCCCGCTCGGCTGCGAAGCAGTCGCAAAGCTTTTTGGTCCGCTTCGCGACCCAGCGGG AGCAAGCTCCCTCGCCACACAGGCTCGCTCCTATAGGGGATCTCAGTCTGGCTGGGCGGCCGTGAAACTATTCTGCGGCGCCGGCTCGCGCCGAATCATC CGCGTCATCTTCCACTCAAACGCCAGCGTCAGGCTCACCGCCGCACACGCCAGCCCCAGCGCCAACCCCCACCAGACGCCCGTCGGCCCCCAGTTCAGAT GGAAGGCCATCCACCAGGCGGCCGGCGCACCAATCAGCCAATAGCAGCCCAAACCCACCAGGAACGTGGTCTTGGCATCCTTGAGTCCGCGAATGCAGCC CATGGTAATGGTTTGCGTGCCGTCGAACAGCTCGAACCACGCCGCTACCGCCAACAAGCTCACGGCCAGTTCGATGACCGGGCGGAACGCCGGGTCGTTG
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAQEPAWAALLRECLAPMGSSAVLLSAPSWESVSNLFDDNRSAVLLTIPALQPAPGRCSLPTVLLLEHEPLAPPDGVSDWLVRNLLDP GMLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLAARLADNDGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKSQLEAGDQLARL GSDEFALLIDTRRAPQRAEWMAERITEALSEPYWIDGESLLIGSSLGIAHARAQAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSIADLESEL RRALRRDELELHYQPRLNLADGQIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLPALHMAINLSFRQFQDSQLLT TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKVDKSFVGGMEEREENRKLVHAMINLAHNLN LEVVAEGVETPEQLDLLRGFGCDQVQGYLISKPLPLAELVEYLTFGSSQQPALEVVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|