Pseudomonas sp. 45MFCol3.1, G368_RS0116275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGCTCGGCTAATCAGCTCTTCCCAAAACCGCTGCAAGGGCTTTACATTGGTGCTTATAGCGCGTTGAAGAGCCTGGTCAAAAAATCAGCGCTTCCCTA ATCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGA AGACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGTGGCAAAGAGCCCCTGGTTCAG TGGGAAAACGACAAGCCTACAGTTGTAGCGCTACGTGAAATCGCTGAGGGCCTGATGAGCTACGAGTTCATCGCCAACGCTGAAATCGTCGAAGACGAAC CGCTGTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCAGTATAAGCCATGCCTGGTCGACGTAGCACGGCGCGGGGTCATAGCAAACGGCAGGTGTCATC
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| DNA Sequence for Gene |
>G368_RS0116275
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAAGGACCAGGTCAACCTGGTCCGCCGAGCGTACTTCTACGCCGAACAAGCCC ACGACGGTCAACGCCGCCGCAGCGGTGAGGCGTACGTCACGCATCCTCTTGCGGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCAATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAGGAAGCGCTGCAAGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGTACCCTGGAAGTGCTGTCCGGCGAAAAGCGCCGGCGGATCGCCAAGGAAACCCTGGAAATCTATGC GCCCATCGCCAACCGGCTGGGCATGCACGCCATCCGCATAGAGTTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCAACCAG GCGGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTCAGCCACTGCCTGGCCATCGACGGCATTCAGGGCGAGGTCA GCGGTCGTCAGAAACACCTCTACGGCATCTACAAGAAAATGCGTGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGTGCCGTGCACAATTTGTACAAACCGTTGCCGGGGCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGTGTACCGATCGAGATCCAGATCCGCACCCGTGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAATCCAGCGGCGACGAACAGCCCAAAGGCACTCATGCCCGCGCCCGCCAGTGGGTCAAAGGCGTGCTGGAGATGCA GCAACGGGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTCGCTTACGCGGTACACACCGACGTGGGCAACAGCTGCATTGCCTGTCGGATCAACCGTCGTCTCGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATCGTCAGCGCCCCCGGCGCACGGCCGAACCCGGCATGGCTCAATTTCGTGGTCACCGGCAAGGC GCGGACCCACATCCGCCATGCACTGAAACTGCAACGCCGCTCCGAATCCATCAGCCTCGGCGAACGCCTGCTAAACAAGGTGCTCAACGGCTTCGACAGC TCGCTGGAAAAAGTCCCGGCCGAGCGCGTGCAGTTGATGCTCCACGAATACCGCCTCGAATTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAATC GCATGGCTTACGTGGTCGCCCGCCGCCTGCTCGGCGAAGGCGAACAGCTGCCGAGCCCGGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGCCTGGTCCT CAGCTACGCCAAATGTTGCACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAACTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGACGGTCGTATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTCATCCGCATCACCCGCATGCGC GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCACCCCTCACAAGGAGTCATACATGACCAAGACCGTTATCAACAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCCCAGGCGATCAAGGCTGGCA ACACCGTGTACATGTCGGGTCAGATTCCTCTGGACCCAAAAACCATGGAACTGGTCGAAGGCTTCGAAGCCCAGACCGTCCAGGTGTTCGAGAACCTCAA AGCCGTGGCTGAAGCTGCCGGTGGTTCGTTCAAGGACATCGTCAAACTGAACATTTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAATGAGATCATG GGCAAGTACTTCGACCAGCCTTACCCAGCCCGCGCCGCCATCGGTGTCGCTGCACTGCCAAAAGGCTCGCAGGTCGAGATGGACGCCATTCTCGTCATCG AGTAACGGGTAACACGTCCTGGCGCAGCCGCCGCGCTGCGCCAATTCCGTTTTTGAAAGGATTCCGTCATGCGCAAAGCGCTTGCTCTCTCTTTGCTTGC
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARINQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKVPAERVQLMLHEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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