Pseudomonas sp. 45MFCol3.1, G368_RS0116135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATGTGCACCAACCAGAACCTGCCGCGCAAGCTCAAGCTCGGCGACATCCGCATGGCCTGCGAAGAGACGCCGGAGTTTTTGAGTTTCCGCAATATCACCC CGGCTACCTCGAGTTTCGCGCCGCCGCTGAACCGCGACTTCCTCTGGAAGCTGATCAGCAACATGTCGCTCAACTATCTGTCGCTGGCCGACGTCAACGC GTTGAAGGTGATTCTCGAAACCTACGACCTGCCGCGCTACTACGACCAACACGCGGAAAAAGTCAGCAAACGCCTGCTGGGCGGGCTCAAGTCGATCAAG CACCAGCATGTCGACAGATTGCACCGAGGGTTGCCGGTTCGCGGGCTGCGCACCGAGCTGACCATCGACCCGGAAGGGTATATCGGCGAGGGCGACCTGT TCGTGTTCGCTTCGGTTCTTAACGAGTTTTTCGCGCTTTACGCCAGTCTCAATTCGTACCACGAGCTGCGGGTAAAAAGCACACAGGGAGAGGTGTACCA
DNA Sequence for Gene
>G368_RS0116135
ATGGACACCACGTATGGGCCTGCAGCCCCTGCTTTAAGCGGGCTGACCCGGGTAATACGCGAGTACTCGCTGTTTCAGGCCGTGCTGCTGGTGATTGACC GGCTGCGCGATGCACACCCGCACCTGAGCGAAGACGACCTGTACGACCAGCTGGAATTCCAGGCCAACCCGAGCCTGGGTTTCCCTGGCAGCGACGTCGA TCGCGTGGAGTTTTTCGAAGAACACGGGATGAGGCGCGCGCGTCTGCGCTTCAACCTGATCGGCCTGGTCGGCTCCGGTTCGCCGTTGCCTGCGTTTTAT GGCGAACAAGCGCTCGGTGACAGCGAAGACGGCAACCCGACTCGCAATTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGC AAAAGTATCGCTACCGCGCGAGTTTCCAGAGCGGCGCGCTCGACCCGTTTTCGGCGCAGCTGTTTGCCCTGATCGGCCTCGGCGGCGAAGAGATCCGCAA GGCCCAGGAACTGAACTGGAAACGCCTGCTGCCGTACCTCGGCCTGCTCAGCTTGCGGGCGCACTCGGCGGCGTTGATCGAAGCGGTGCTGCGCTACTAC TTCAAGCACGCCGAGCTGACGATCGAACAGTGCATCGAGCGCCGCGTCGAAATCCTCGACGAGCAGCGCAATCGCCTCGGTCGCGGCAACAGCATGCTCG GCGAAGACCTGGTGCTGGGCGAGCACGTGCGCGACCGCAGCGGCAAGTTCCGCATTCACATCCGCGAGCTTGACTGGCAACGCTTCCACGAATTCCTGCC GATCGGTTTCGGCTACCAGCCGCTGTGCGCGCTGGTGCGGTTCACCCTGCGTGACCCGCTCGATTACGACATTCGCCTGGTGCTGCGCCAGGAAGAAATC CGCGAACTTCGCATCGGTGAGCAGAACGCCTGTCGCCTGGGGTGGACCAGTTGGCTGGGCCGCGAAAAAGCGGACGGCGTGGTGACCCTGGGCAGCAAAA TTCATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGACAGATGACACATGATCAACGTAGACCTGCAACAACTTATCCAGGCGCTGGACGCCGAAACCCGTCGTGATCTGGAAAGTTCTGCCGAACGCTGCGTC GCCCGTGGCGGCAGCAAGATCCTCGTCGAAGACTTGCTGCTGGGCCTGCTGGAGCGTCCGCAAGGTCTGCTCGCACGGGCGTTGCAGGATGCCGAAGTGG ACGCTGGCGAGCTGAGCGCCGCGCTGCAATCGCGGGTCGAGCACAGCGCCTCGCGCAACCCGGTGTTCGCCCCGGAACTGGTGCAGTGGCTGCAGGATGC CTTGCTGGTGGCCAACCTCGAACTGGGCCAGAGCCAGGTCGAGCAAGCCGCGTTGATCCTCGCATTGCTGCGCAACCCGATGCGCTATGCCGGCAGCCGT TATCAGTCGTTGCTGGCCAAGCTGAACATCGAGCGTCTGAAAGAATTCGCCCTGTCGCAGAAAGAACAACCGGCCACCGGCAAACCGGCCGTGCCCGGCG
Amino Acid Sequence
>type VI secretion protein
MDTTYGPAAPALSGLTRVIREYSLFQAVLLVIDRLRDAHPHLSEDDLYDQLEFQANPSLGFPGSDVDRVEFFEEHGMRRARLRFNLIGLVGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWQKYRYRASFQSGALDPFSAQLFALIGLGGEEIRKAQELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHAELTIEQCIERRVEILDEQRNRLGRGNSMLGEDLVLGEHVRDRSGKFRIHIRELDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI RELRIGEQNACRLGWTSWLGREKADGVVTLGSKIH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site