Pseudomonas sp. 45MFCol3.1, G368_RS0115980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGACCTGCCGCTGTTCATGAGCGTGGGCAACAACAAGACCGACTTCACCCTGGCCGACAGCGCGCCGGTAGCGGCGGTACGCTGCGTGGCAGGCCCGA GCCGCCCACGCGCCAGCCATGCCCACGACGCCAAGGCCTGGCGGTTGATCAGCCAGCTTTCGCTGAACTACTTGTCCCTCAGCGAGCAAGGCCAGGGCGC CGCCGCCCTGCGCGAGCTGCTGCGCCTGTATGGCGACGACAACGATGCAGCCTTGCAATTGCAGATCGAAGGCCTGCGCGAAGTCAGCAGCAAAGCCTGC ACCCGACGTTTGCCAATGCCGGGCCCGATCGTGTTTGGCCGCGGTATGGAAATCACCCTGGAATTCGATGAGAACGCGTTTCGTGGCACGGGCGTCTTTT TGCTCGGTGCAGTCTTCGAGCGCTTCCTGGCACGTTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAGCGCGGCGAGATCATGCG
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| DNA Sequence for Gene |
>G368_RS0115980
ATGGAAAGCCAAACCCGGACGCCGTCCGACCCTGTGAATACCCTGGACGCGATGCACCAGCAGCCCTGGGAATACGACTTCTTCCAGGCATTACGGCGCA TCGAGTGCGAATCGCCTGAGCTTCCGCGCCTGGGCCATTCGTTGCGCCTGGCCGATGACCCCTTGCGCCTTGGGCAACAAGCCGATTGCACCTTCGCCCC GGCGACCCTGGCCTCGGTACAGCCGGGTATCGACGGTTCGCCGGCACGTCTGGAACAGTTCTTTTTTGGCCTCGGCGGCCCCAACGGCCCGTTGCCGCTG CACCTCACCGAATATGTGCGTGAACGCCAGCGCAACAACGCCGACAGCACCAGCAAACGCTTTCTGGATGTGTTCCATCATCGCCTGCTGAGCCTGTTTT ACCGGGCCTGGGCCGAAGCGCGACCGACAGTCAGCCATGATCGCCCGGACGATGACTACTGGTCGGCACGTCTGGCAGCGCTAAGCGGTCGAGGCATGCC GAGCCTGCTCAAACAAGGCCTGATACCCGACACGGCGAAGCTGCATTACAGCGGTCATCTGTCGGCACAAACCCGCTATCCCGACGGTTTGAAGGCAATC ATCGGCGAGTACTTCGGCCTGCCGGTGGAGATCGAAGAATACGTCGGCCAATGGCTGGTGCTGCCGGAGCGCAGCCGCGTGGGCGTCAGCGCCCATCAAT TGGGCGTGGATTTTTGCCTGGGCCGCTGCGTCTGGGATCGCCAGCACAAATTCCGCATTCGCCTGGGGCCGCTCAAGCTGGATGACTACATGAGCATGTT GCCCGGCAGCCCATCCTTCAATGAGCTGGTGGCCTGGGTGGCCGAATACCTGGGCCATGAACTGGACTGGGATCTGAACCTGGTTCTGAAACAGCCCGAA GTGCCGACGCTGCAACTCAATGGCCGCTTCCGCCTGGGGTTCAATACCTGGGTGGGCAAGCCCGCAAAAGATGCCAAGGACTTAATACTGGCCCGGCATT ACGCCGAGCAAGCCAACACCTCACAGATCTCAAGGAGCCAAGAGCATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGTCGCGCCGCGTTGTTCGGCAAACTCAATAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAGTTGCGCGGTAACCCTTATGTG GAACTGGCCCACTGGTTTCATCAGTTGCTGCAATTGCAGGATTCGGACCTGCACCGCCTCATCCGCCAGTTCAATATCGAGCCGGCGCGCCTGGCCCGGG ACTTGACCGAAGCCCTGGACCGTTTGCCACGGGGCTCGACGTCAATCACTGACTTGTCCTCCCATGTGGAAGAAGCCGTGGAGCGCGGCTGGGTCTACGG CAGCCTGATGTTCGGCGAAAGCCAGGTGCGTACCGGTTATCTGGTGCTGGGCATCCTCAAGACCCCGAGCCTGCGCCATGGATTACTGGGACTGTCGGCA GAGTTCGACAAGATCAAGGTCGAGGCCCTGAGCGAGCGTTTTGACGAGTACGTCGGCGACTCGCCGGAAAATGCACTCAGCGCCAGCGATGGTTTCAACG
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| Amino Acid Sequence |
>type VI secretion protein
MESQTRTPSDPVNTLDAMHQQPWEYDFFQALRRIECESPELPRLGHSLRLADDPLRLGQQADCTFAPATLASVQPGIDGSPARLEQFFFGLGGPNGPLPL HLTEYVRERQRNNADSTSKRFLDVFHHRLLSLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLKQGLIPDTAKLHYSGHLSAQTRYPDGLKAI IGEYFGLPVEIEEYVGQWLVLPERSRVGVSAHQLGVDFCLGRCVWDRQHKFRIRLGPLKLDDYMSMLPGSPSFNELVAWVAEYLGHELDWDLNLVLKQPE VPTLQLNGRFRLGFNTWVGKPAKDAKDLILARHYAEQANTSQISRSQEHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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