Pseudomonas sp. 45MFCol3.1, G368_RS0113670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGTCGCCGATGTGCTGGTTCGGTGGTTACGAAGGCGTACCGACCAAAGCGTTCGTCGGCAATTATTACCTGAGCGGCGACACCGTCGAGTGGAATCCG GACGGCAGCATCAGCTTCGTCGGCCGCAGCGACGACGTGATTACCACCTCGGGCTACCGCGTCGGCCCGTTCGACGTGGAAAGCGCGCTGATCGAACACC CGGCGGTGGTCGAGGCGGCGGTGATCGGCAAACCCGACCCGGAGCGCACCGAACTGGTGAAAGCCTTCGTCGTGCTCAGCCCGCAATATCGTGCCGAACC TGCGTTGGCCGAAGAACTGCGGCAACACGTGCGCAAGCGTCTGGCGGCGCACTCGTACCCCCGTGAAATCGAATTTGTCAGTGAATTGCCGAAAACCCCA AGCGGCAAATTGCAGCGCTTTATCTTGCGCAACCAGGAAATCGCCAAGGCTCAAGAGGCCGCCGCGAAGAACGTTTCAGCTTGAATCCAAGGAAACAATG
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| DNA Sequence for Gene |
>G368_RS0113670
ATGCAGATCGAAAACAAGGTTTTTCTCGTCACCGGCGGTGCTTCCGGCCTCGGTGCCGCCACCGCTGAAATGCTGGTGGCGGCCGGTGCCAAGGTGATGC TGGTGGACATGAACGCCGAAGCCGTCGCGGCGCAGGCGGCACGTCTCGGCGCGCAAAGCGTGGTAGCCGACATCAGCAATGAAGCGGCGGCAGAAGCGGC GGTGCAGGCGACGGTCAAAGCGTTTGGCGGCCTCAATGGCCTGGTCAATTGCGCCGGCATCGTGCGTGGCGAGAAGATCCTCGGCAAGACCGGCCCCCAT GCCTTGGCCAGTTTCAGCCAGGTGATCAACGTCAACCTGATCGGCAGTTTCAATATGCTGCGCCTGGCTGCTGCGGCGATTGCCGAGACCGAAGCCGATG CAGACGGCGAGCGCGGGGTGATCATCAACACCGCATCGGTGGCGGCCTTCGATGGTCAGATTGGCCAGGCCGCGTATTCGGCGTCCAAAGGCGCGATTGC CAGCCTGACCTTGCCTGCCGCCCGTGAACTGGCGCGCTTCGGCATCCGCGTGATGACCATCGCGCCGGGCATTTTCGAAACGCCGATGATGGCCGGCATG ACCCCGGAAGTACGTGATTCACTGGCCGCTGGGGTGCCGTTTCCGCCGCGCCTGGGCAAGCCGAGCGAGTACGCCGCGCTGGCCAGGCATATCATAGAAA ACAGCATGCTCAACGGCGAAGTGATCCGTCTCGACGGTGCCTTGCGCATGGCCGCCAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGTATTTGTCATGACACTGTCCAACGATCCGATTGTTATTGTCAGCGCCGTCCGCACCCCGATGGGCGGTTTCCAGGGCGAACTGAAAAGCCTGACCG CGCCACAGCTGGGCGCTGCTGCGATTCGTGCCGCGGTCGAACGCGCCGGTATCGCCCCTGAATCCGTCGAAGAAGTGCTGTTCGGCTGTGTGCTCTCCGC CGGCCTCGGCCAGGCCCCGGCGCGGCAAGCGGCACTGGGCGCCGGGCTGGATAAATCGACCCGTTGCACGACGCTGAACAAAATGTGCGGCTCTGGCATG GAAGCGACGATCCTGGCCCACGACATGCTGATCGCCGGCAGCGCCGACGTGGTGGTCGCTGGCGGCATGGAAAGCATGTCCAACGCGCCGTACCTGCTGG ATCGCGCCCGCAGCGGTTACCGCATGGGCCATGGCCAGGTGCTCGATCACATGTTCCTCGACGGCCTCGAAGACGCCTACGACAAGGGCCGCCTGATGGG
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| Amino Acid Sequence |
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MQIENKVFLVTGGASGLGAATAEMLVAAGAKVMLVDMNAEAVAAQAARLGAQSVVADISNEAAAEAAVQATVKAFGGLNGLVNCAGIVRGEKILGKTGPH ALASFSQVINVNLIGSFNMLRLAAAAIAETEADADGERGVIINTASVAAFDGQIGQAAYSASKGAIASLTLPAARELARFGIRVMTIAPGIFETPMMAGM TPEVRDSLAAGVPFPPRLGKPSEYAALARHIIENSMLNGEVIRLDGALRMAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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