Pseudomonas sp. 45MFCol3.1, G368_RS0108940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACACCCCGATTGCGGTGGACTTCATTGCGGTGAACGACGCGGATCTGCTCAAGCAATTGTCGGGCATCACCGCTCGCCAGTGGTTCGCCGAACGCGAGCA GTATCAGCGCGACTACCGGCAGCTGATGACGGTCTGGGGACTGGAGCTGGTGCCCGGTCAATTCATCGACAAACAACCCTTCCCGTTGGGGGGCAAGCGG GCGGCTGGACTTTTAGTCTTCGCCAGCTATACCACTCCCGGAGCACACCGGTTGCGGCTGGACGATCAAAGCAACGCCTGGCTCAAGTTCGACAGTCGCG AGATGACACTGGTCAGCGACCACCCGAACTGAACACAGAATTGTGGCGAGGGGGCTCTGTGGCGAGGGGGCTTGCCCCCGTTGGGTTGCGAAGCAGCCCC AAAATCGCTGATACACCAACAATCTTGTGAGTGCTACGCACTCAAACGGGGCGATGCGGCGATCCGACAAGCCCCCTCGCCACAGGTCGAAAGGAGTCGT
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| DNA Sequence for Gene |
>G368_RS0108940
ATGAGTCTGCTTCCTGACGCGGTTTGCTGGCATGAGGGCATGCAGTTGCTGCCCCAGCATTTTCAGTTGCAAGGGCTGCGGGCCGAGGCGTTGGTAGCGC ATTTCGCCCAGGCGTGTAATCCATGGTTCTGGGGCGTGACCCGCGTTGAATTCGATCCCTCGGCGCTGAGCGCCGGGTTGGTGCGTCTAATCAATTTGCA GGCGACGTTGCCGGACGGTTTACCAGTCAATTTGCAGGCCGGTGTCGGGCCGATACTGGAGCTCGACGTCAGTGAGGCGATCGATGCCACGGACAATGCC ACCGTCACCGTTTACCTGGCGGTCAGCCCGCTGTGGCGTGCCGGTCAGTTGCTGCCGCTCAAGGGGCGATTGCAGTCTGTCGTCGGCGACGCTTTGCCGG ATCTCACCAGCGGCGAGTACCCCGAATCGATCACGGTGTGGCGTCCGAATCCGCGTTTGTGCACGCAACTGAACAAGGCCGATTCTGTCTGCCTGCCGCT GCTGAGAATTCGCAAGGAAGGTGGCGGCTTTCTTGCGTTGCCTTACACACCGCCGACGCCATGCCTGTTGCCCGAGTCGGTGGTGGGTCGACGCGTGGCG GGGCTGTGCGCCAGGGCGCGGGAGAAATGCATGTTCCTCGCCGGTCGTTTGCGCCAGGCGCAGCAGGCCGGCAATCAGGACGACGCGATGGAAATTCGGC GTCAGTTGACGGCGCTCTGGGCGCGACTGCCGGAAGTCGAAGGTCTGCTGAACAGTCGCGTGGCCACGCCGCAGGCGCTGTATGGCTTGCTGCTCGGGTT GGCCGGCGCCTGGTCGGCGCTCGATCCATTGGCGGGTGTTCCGGCGTTCGCCCCGCTGGATTTTCTGGAGTTGCAGCGCGGCTATGAAACGGTGCTCGAC TGGCTGGAAAAGACCCTCGAACTGATCCGCGCCGGCTATCGCAGCCTGGCGTTCGAACGCAACGAACAATCCTTCTCGATTCAATTGCCCGACGACCAAC CGAGCCAACGGCTGGTCATCGGTTTGCGCATGCCCAATGGCGCCAGCGAGCAGGCCGCCAGCGAATGGCTGAGCGGAGCGATCATCGCCTCGCAGCCGCA CATCCCGTTGCTCAGCCGTCAGCGCATGAGCGGTTTGTCCCATGAGGCCATGAGCCGCAATGAGCAAGTGGCCTACGGCGTCGGCGACGATACGCGGTTG TTCGTGGTGACGGCCGAAGGCCAATGGTTCGACGGGCAGTTGCCGTTGCTGATTGCCGCACCGGCTTCCAGGCTGGCCAGCAGTCCATGGCAAGTGGTGT TGTTTGTGGCCCAGGCGAGTGAAAGTGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGAGGAAGGAACGTCATATGTCTGAGGGGAATGCCGGGACAGGTACACGAGGCCTGAACGAAGCGCCGCTGAGCAGTGCTTTTCGCCAGGCCTGGCAGC AATGGTCCCAGGACTGGAGCCAGTTGCCCAAGGACAGCGAAGACGAAGCGCTGGTGGAAGCGGTGGTCGAACTCTCCACGCAAATCTCCCAGCGACTCTG GCGAACCGCTTTTGCCAAAGTCGGTGATGCCGCCACTGAACAAGTCAAAGCGCTGGTCTATGCCTTTGTCGCGCTGGTCGATGAAACCTTGCTGTTCACG CCGTGGCCGGGTCAGTCCACTTGGCAGGAAAAACCCCTGGAATCGCGAATGTACGCCAGCCGCCAGGCCGGCGAGCGAATACCGTTGGCGATCAAGGAGC TGCTGGATGAGCAAATCCCTACCACTCGCGATCTGGCCAATGTCTATTTGCAGTGCCTGGTGCTGGGCTTTCAGGGGCGTCTGCGGGGCGAACAGAATCA
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| Amino Acid Sequence |
>type VI secretion protein
MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALVAHFAQACNPWFWGVTRVEFDPSALSAGLVRLINLQATLPDGLPVNLQAGVGPILELDVSEAIDATDNA TVTVYLAVSPLWRAGQLLPLKGRLQSVVGDALPDLTSGEYPESITVWRPNPRLCTQLNKADSVCLPLLRIRKEGGGFLALPYTPPTPCLLPESVVGRRVA GLCARAREKCMFLAGRLRQAQQAGNQDDAMEIRRQLTALWARLPEVEGLLNSRVATPQALYGLLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYETVLD WLEKTLELIRAGYRSLAFERNEQSFSIQLPDDQPSQRLVIGLRMPNGASEQAASEWLSGAIIASQPHIPLLSRQRMSGLSHEAMSRNEQVAYGVGDDTRL FVVTAEGQWFDGQLPLLIAAPASRLASSPWQVVLFVAQASESA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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