Pseudomonas sp. 45MFCol3.1, G368_RS0106725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCCGCGTGACCCACAGTCCGGCCAACCGACCGGTCAGCGTGTACACAAGCCAGTCGTGATCACCAAGGTATACGACAAGTCTTCGCCACTGCTGCAAG CGGCGCTGACCTCCGGCGAGCGCATGAGCGAAATCGTTATCCAGTGGTACCGCACCTCTGCTCAAGGTACCCAAGAGCACTACTACACCACCAAACTGGA AGACGCGATCATCGTCGCCATCAACAACAAAATGCACAACTGCCAGGATCCGTCGAACTCGCACTTCACGCACCTGGAAGAAGTGCAATTCACCTACCGC AAAATCACCTGGACCCACGAAGTATCCGGTACTTCGGGTTCCGATGACTGGCGTGTTCCAGTCGCTTAATCGCGGCTGACGGTTCCAAACATCGGCCAGC TCTGCTGGTCGATGTCATTTGCGCCTTCCAGGAATTTTCGCGTCCGCAAGCGCCCGTTTGGGTGTAGGCGTGCGCCGCAGCACTGCACGAGGAACAAGGG
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| DNA Sequence for Gene |
>G368_RS0106725
ATGTTCGCGCCGGCCAATCAGACTCACTTTGCCCTGACTGTCGAAGGTCTGGAAAACGATCTCCAGGTCCTTGCCCTGCAAGGTCGGGAAGCCATCAGCC AGCCTTTTGTGTTTGAGGTGGAACTGGTCAGTGAGCAGCCGTCCCTGGACCTCGAAACGCTATTGCACAAACCGGCCTTTTTGCAGCTCTCGCCTGACGG CAGCGGCATTCATGGCCAGATCTACCGCGCCGCCCAGGGCGATTCGGGCAAACGCCTGACCCGCTACGCCGTGACCTTGCGCCCGCAGCTGTCCTACCTG GCGCACCGCATCAACCAACGCATCTTCCAGAACCTCACTGTGCCGAAAATCATCGGGATGGTCCTCGAAGAGCACGGCATCCAGAGCAATGCCTACGAAT TCAAAGTCGGGGCGATTTATCCCGAGCGCATTTACTGCGTTCAGTACGATGAATCGGACCTGCAGTTCATCCAGCGCCTGAGCGAGGAAGAAGGTATTCA CTACCACTTCCAGCACAGCGCCACGGCCCACAAGCTGGTGTTCGGCGATGACCAGACGGTGTTCCCGAAACTCGCGCCCGTGGCCTACCAGCAAGACTCC GGCATGGTCGCCAACGACCCGGTAATCAAGCGCTTCGACCTGCGCCTGGAAACCCGCACCAGCCGCACCACCCGCCGCGATTACGACTTCGAAAAACCGC GCCTGAAACTGGAAAGCGAGAACCGTGGCGACGCCCTGCCCGACCTCGAAGACTACGACTACCCCGGCCGCTTCATCGACCGCGAACGCGGCAAGCATCT GGCCAAACGCGCCCTCGAGCGTCACCGCAGCGACTTCCAGTTGGCCGAAGGCCGAAGCGATCAGCCGTTGCTGGTCAGCGGCCACTTCCTGGCCCTGACC CAACACCCCAAGGCCAAGTGGAACGACCTGTGGCTGCTGACCGAAATCCTCCACGAAGGCAAACAGCCGCAAGTGCTGGAAGAGTCGGTGACCAGCAGCA CCACCAACCTCAAGGACGATTTCCATCAGGGCTACCGCAACCGCTTCCAGGCTACCCCTTGGGACGTGCCGAATCGCCCGCCGCTGAACCACCCCAAGCC ACGGATCCTCGGCAGCCAGAGCGCCGTGGTTACCGGCCCCAAGGGTGAAGAGATCCACTGTGACCAATACGGCCGCGTCAAAGTGCAATTCCATTGGGAC CGCGAAGGTCAGGCCGACGACAAGACCAGCTGCTGGCTGCGCGTCTCCTCCGCCTGGGCCGGCGCCCACTACGGCGGCATCGCCATTCCACGCATCGGCA TGGAAGTGCTGGTCAGCTTCCTCGAAGGCGATCCCGACCAACCGCTGATCAGCGGCTGCCTGTACCACAAGGAAAACGTCGTCCCGTATGCCCTGCCGGC GAACAAGACCCGCAGCACCTTCAAAACCCTGAGTTCTCCGGGCGGCGGCGGATTCAACGAGCTGCGCATCGAAGACAAAAAAGGCCAGGAACAGATCTTC CTGCACGCCCAGCGCGACTGGGACGAAAACGTCGAGCACGACCAGAAAATCCGCGTCGGCAACGAACGCCACGACACCGTCGAGCAAAACAGCTACAGCG AATTCAAGGCCGAAGAACACCACACCGTCTACGCCGACCGCAAAGTCGAAGCCCGCGCCAACGACCACCTCACTGTGGGTGTCAACCAGCACATCAAGGT CGGCACCGGCCAATTCATCGAAGCCGGTCAGGAAATCCACCTGAGCAGCGGCATGAAAGTCGTGCTCGAAGCCGGCAGCGAACTCACCCTCAAGGGCGGC GGCAGCTTCATCAAGATCGATGCCAGCGGCGTGACGCTGAGCGGACCGGCGATCAACATGAACTCCGGCGGCAGCCCGGGCAGCGGCACTGGAGCGGCAC CGCTGATGCCTGGGGCGCTGAAACAGGCTGATGCGGATAAGGCTGGTGCTGTGTTGACCCCGGCGCAGATTAATACGCTGAAGCGCAATGCGCCGTTCTG TGAAGAGTGCGAGAGGTGTAAGGCGGGTGTATGCGACATAGAAAAGACCACCCATGATTTGGTTTTCATCGTAAATGATGAAACCACTGGTAAACCGAAG CCGAATATTCCCTACCAAATAAAGCTTGAATCTGGACGTATTGTTAAGGGCGTTACTGACAGCAAAGGAATGACCCAAAAGGTTGCATCCAACAAACCAG AAAAAGCCACTCTCGAGGCCCCCTATTATGGCGACAGTACAAGCGACACTCACTCCGACTGCGGATCAGACGCCTGTGGCTGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGTTTCAGCGGATGAACCCAGTGGTGCTCAGTGGGTAGCAAGATTCCCAGGCAGCGCGAATCTCACCTCACTTAACTCGCCCTTTCGCGAGGCAGTGACA AAGTTCCTAGATGTAGTAAAGGCTGCCGGCGCGACTGTGCATATTTCCGCGACATACCGACCACCGGAAAGAGCTTACTTAATGCACTGGTCGTGGAAAA TAGTTAAGACAGGGTTCGACCCGCAACAGGTTCCCAGCTATCCAGGTGAAGTTATAAAAATCCAATGGGCCCATACTTCCGAGTCTGGCGCGTTTGATCA ACAGGCCTCTGTACAAGCAGCCAGGGCCATGGTGAATGGCTACGGAATCAGCGGACTGAACGTCGCCCCGGCGCTTAACTCACGGCACACCCAAAAACTC GCGATCGACATGAATATCAGCTGGACCGGGACCTTAACGATAAATAATGCCTCAGGGACAGCGGTCGCTATAAGCTCAGATCCCAAAACCGGGATGAACA
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MFAPANQTHFALTVEGLENDLQVLALQGREAISQPFVFEVELVSEQPSLDLETLLHKPAFLQLSPDGSGIHGQIYRAAQGDSGKRLTRYAVTLRPQLSYL AHRINQRIFQNLTVPKIIGMVLEEHGIQSNAYEFKVGAIYPERIYCVQYDESDLQFIQRLSEEEGIHYHFQHSATAHKLVFGDDQTVFPKLAPVAYQQDS GMVANDPVIKRFDLRLETRTSRTTRRDYDFEKPRLKLESENRGDALPDLEDYDYPGRFIDRERGKHLAKRALERHRSDFQLAEGRSDQPLLVSGHFLALT QHPKAKWNDLWLLTEILHEGKQPQVLEESVTSSTTNLKDDFHQGYRNRFQATPWDVPNRPPLNHPKPRILGSQSAVVTGPKGEEIHCDQYGRVKVQFHWD REGQADDKTSCWLRVSSAWAGAHYGGIAIPRIGMEVLVSFLEGDPDQPLISGCLYHKENVVPYALPANKTRSTFKTLSSPGGGGFNELRIEDKKGQEQIF LHAQRDWDENVEHDQKIRVGNERHDTVEQNSYSEFKAEEHHTVYADRKVEARANDHLTVGVNQHIKVGTGQFIEAGQEIHLSSGMKVVLEAGSELTLKGG GSFIKIDASGVTLSGPAINMNSGGSPGSGTGAAPLMPGALKQADADKAGAVLTPAQINTLKRNAPFCEECERCKAGVCDIEKTTHDLVFIVNDETTGKPK PNIPYQIKLESGRIVKGVTDSKGMTQKVASNKPEKATLEAPYYGDSTSDTHSDCGSDACGC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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