Pseudomonas sp. 45MFCol3.1, G368_RS0104935
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCTGCGTTTCGGCGAGATGGACATTTTCCACCGCCACGAAAGCATGGCCGGTAACGGAGAAGTGCTGTTCTCCATGGCTAACGCGGTCAAGCCGGGCGT TTTCGATCTGGATGATATCGACCACTTCAGCACCCCGGCGGTGAGCTTCTTCCTCGGCCTGCCAGGCCCGCGTCATCCGAAGCAAGCCTTCGACGTGATG GTAGCGGCGGCGCGCAAGCTGTCCCAGGAGCTGAACGGCGAGCTGAAAGACGACCAGCGCAGCGTGCTGACCGCCCAGACGATTGAGCACTACCGTCAGC GTATCGTTGAGTTTGAACGCCGCGCATTGACCCAGAAGCGCTGAGGTCAAAGGATCGCAGCCTCGTTTCACTCGACAGCTCCTACAGGATTCGCGATTTT CTGTAGGAGCTGTCGAGTGAAACGAGGCTGCGATCTCCTGACCTTGATGAAATGAGATTGAGCAGCCTCGGCTGCTCTTTTGCTTTATGAGAGAACACCC
|
|
| DNA Sequence for Gene |
>G368_RS0104935
ATGACTGCCGCCGAAACCCGCATTCTAGAGCTGCGCGCCGAGCTCGATCAGCACAACTATCGCTACCACGTGCTGGATGAACCGAGCATTCCGGACGCCG AATATGATCGCTTGTTCCATGAGCTCAAGGCGCTCGAAGCAGCCCATCCCGAACTGATCACCAGTGACTCGCCGACCCAGCGCGTCGGCAGTGCGGCGCT GTCGGCGTTCACTCAGGTGCGTCATGAAGTGCCGATGCTCAGCCTTGGCAACGCCTTCGAAGAAACCGACATGCGCGAGTTCGACCGTCGGGTGACGGAA GGGCTGGACCTGCCGGTCGGCGACCTGTTCGGTGGCGGCGCAGCGGTGGAGTACAGCTGCGAACCCAAGCTCGATGGCCTGGCGGTCAGCCTGCTGTATC AGGACGGTATGCTGGTGCGCGGCGCCACTCGCGGCGATGGCACCACGGGCGAAGACATCAGCGTCAACGTGCGCACCGTGCGCAATATCCCGCTCAAGCT GCATGGCAGCGGCTGGCCGGCGACCCTGGAAGTGCGCGGCGAAGTGTTTATGTCCAAGGCCGGTTTCGAGCGGCTCAACGCCACGCAACTGGAAGTCGGC GGCAAGACCTTCGCCAATCCGCGTAACGCGGCGGCGGGTAGCTTGCGGCAGCTGGATTCAAAGATCACCGCCAACCGTCCGCTGGAATTCTGCTGCTACG GCATCGGCCAGGTTTCCGCCGATATCGCCGACACGCACATTGGTAATCTGCAGCAACTCAAAGCCTGGGGTATGCCGATCAGTCATGAATTGAAATCGGC TCGTGGCATCGATGAGTGCCTGGATTACTACCGCGACATCGGCGAACGCCGCAATGCGCTGCCCTATGAAATCGACGGTGTGGTGTTCAAAGTCAACAGC ATTGCCTTCCAGCGCGAACTGGGTTTCCGTGCCCGCGAACCGCGTTGGGCCATCGCGCATAAATTCCCGGCGATGGAAGAGCTCACCGAGTTGCTCGATG TGGAGTTTCAGGTCGGTCGCACCGGTGCCGTGACGCCGGTGGCACGCTTGAAACCGGTCAAGGTTGCCGGCGTTACCGTGGCCAATGCGACGCTGCACAA CATGGATGAGGTTGCGCGGTTGGGGCTGATGATCGGCGACACCGTGATCATCCGTCGCGCCGGTGACGTGATTCCGCAAGTGGTGCAAGTGGTTCTCGAG CGCCGTCCTGAGGATGCACGACCGGTACAGATTCCCGAGCAGTGCCCGGTCTGCGGTTCGCATGTCGAGCGTACGCAGCTGGTCAAGCGCAGCAAGGGTC GCGAGACTGTCAGCGAAGGCGCGGTGTATCGCTGCGTCGGCCGTCTGGCCTGCGGTGCGCAACTCAAGCAGGCGATCATTCACTTCGTTTCGCGTCGCGC CATGGACATCGAAGGGCTGGGCGAGAAGAGCGTCGAGCAACTGGTGGACGAAGGTCTGGTGAATTCGCCAGCCGATTTGTACGCATTGACCTTCGAACAA ATCGTCGACCTTGAAGGCTTTGCCGAGCTGTCGAGCAAGAACCTGCTCGGCGCTATCGAAGACAGCAAGCGGCCGAGTCTGGCGCGGTTCATCTATGCCT TGGGTATCCCTGATGTCGGCGAAGAGACGGCCAAGGTGCTTGCGCGGTCTCTCGGCTCGCTGGAGCGTGTTCAGCAGGCGTTGCCGCAAGTGCTCACGTA CCTGCCGGATGTCGGGCTGGAAGTGGCTCACGAGATTCACAGCTTCTTTGAAGACCCGCATAACCAGCAGGTGATTGCCAATCTGTTGAAGCACGGCCTG CAGATTCAGGATCAGGGAGCGTTGGCTGCCGAATTCGCTGCAAGCACCACGCTTGGCGGTTTTCTCGACAAGCTGAACATTCCTTCGGTCGGGCCGGGCG GGGCGCAGAAGCTTGCCGACAAATTCGGCTCGCTTGAAGCGGTGATGAATGCTGACTGGCTGGATATGCGTCAGGCGTTGCCGGAGAAGCAGGCGACCTC GGTGCGTGAGTTTTTTGCGGTCGCAGAAAACCGTCAGCTCGCCGAGTCCGCTGAAAAGCAGCTGCGCGATTTTGGCATGCATTGGCAGAGCGAGAAAAAA GTCGTCGAAGGATTGCCGCTGGCCGGGCAGACCTGGGTGCTGACCGGTTCGCTGGAACTGATGAGTCGCGACGTTGCCAAGGACAAACTTGAAAGCCTCG GGGCCAAGGTGGCCGGTTCGGTATCGGCCAAGACCCATTGCGTGGTCGCCGGGCCGGGCGCAGGTTCGAAGCTGGCCAAGGCCAATGAGCTGGGGTTGAA AGTGCTGGATGAAGAGGCGTTTGTCGAGTTTCTGAAGAAGCACGGTATCGACGTTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GATCGCCAAAAGATCGCAGCCTTCGACAGCTCCTACGGGTGTACGCCTTTCCACTGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATTTTACCCAGGCAG AGCGTGGGAACGATCATTGCTGAGGAATGATCTAGTCTTGGCAGTCCCCAAAGAGAGAACGCCATGTACCGCTTCTTCGAACAGCTCAGCTCGCGCATCG CCGCGCCCTTTATGGGTGAGCATTCGCGCAACAGCAAGGTCTGGCATTGTCGCTGCGGGCAGTCGCTGTTCTTTCGCAACAGCCAGTGCCTGGCCTGTTC GGCGGCACTGGGCTATCAGCCGCAGCAAAGTCGCTTGTCATCGCTGCAATCCGGCCCGCAAGCGGATACCTGGTTGCTCGATGCCGACCCTGACGCCGGT ATTTTCCGCCGTTGCGCCAATCTCGATTCCCCGGCTGCGTGCAACTGGTTATTGCCGGCCAATCATCACGATGGGTTGTGCATCGCCTGTAGCCTGAATC
|
|
| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAAHPELITSDSPTQRVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTE GLDLPVGDLFGGGAAVEYSCEPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRGEVFMSKAGFERLNATQLEVG GKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSADIADTHIGNLQQLKAWGMPISHELKSARGIDECLDYYRDIGERRNALPYEIDGVVFKVNS IAFQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLE RRPEDARPVQIPEQCPVCGSHVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQLVDEGLVNSPADLYALTFEQ IVDLEGFAELSSKNLLGAIEDSKRPSLARFIYALGIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDPHNQQVIANLLKHGL QIQDQGALAAEFAASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQALPEKQATSVREFFAVAENRQLAESAEKQLRDFGMHWQSEKK VVEGLPLAGQTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVEFLKKHGIDV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|