Pseudomonas thermotolerans DSM 14292, H165_RS0104230 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas thermotolerans DSM 14292 H165DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGCGAAAGGCGCATGCAGCGCTGCGCGATACTGCCAGGCCAGCCCCAGACCGGCGCCGTAGAGCACCAGCACCACCCAGTGCATCACCTGGCTGGCG CGCTGGCCAAGCGCCCGGGACAACTGCTCGCGCGGCCCCGTCTCCAATTGTCGCGCCGCGTGGCTGAGGATCATCACCTCGAAGAACACCCCGCCGATGA AGAAGGCGGCGGCACTGATATGCAGGAACTTCAGCAGCAGATAGGTCATTTTCCCTCCTTGTCGTTTCCCATTGTGCCGGCCTGCCCGCCATCGACCATG ACCGGTGTCAAGAAGGGCGTCACAGCGCCGCCGGACAATCCACCCCGCAAGCGCCCCCAGGCTTTTGGCCGCCTACACTTGGCACGGCTTCAGGCCCCGC CGGAAGCTGCCGAGCCGGCTCTGGTCAAGGCTCGGGACGGTCGCTAAAATCGCGCGTTTTTTGATCAAGGCGCCTCGTGAGCGCCCAGAGGTTAGCCAGC
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| DNA Sequence for Gene |
>H165_RS0104230
|rimO
ATGTCCACCCCCGCCACGCCGAAAGTCGGATTTGTCAGTCTCGGTTGCCCGAAAGCTTTGGTCGATTCCGAACGAATCCTGACCCAGCTACGCATGGAGG GCTACGAGGTGGTCGGCACCTACCAGGACGCCGACGTGGTGGTGGTCAATACCTGCGGCTTCATCGACAGCGCCAAGGCCGAGTCCCTGGAAGTGATCGG CGAGGCCATCGCCGAGAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTGGACGAGAACAACATCCGCGGCGTGCACCCCAGCGTGCTGGCGGTCACC GGCCCGCAGCAGTACGAGCAGGTGGTCAGCGCGGTGCACGAGGTGGTGCCGCCGAAGGCCGAGCACAACCCACTGATCGACCTGGTGCCGCCACAGGGCG TCAAGCTCACCCCTCGCCACTACGCCTACCTGAAGATTTCCGAGGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCCTCGATGCGCGGCAAGCTGGT CAGCCGTCCGGTCGGCGAGGTGCTCGGCGAGGCCGAGCGACTGGTCAAGGCCGGCGTCAAGGAACTGCTGGTGATCAGCCAGGACACCAGCGCCTACGGC GTCGACCTCAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACCCGCATGAAGGAGCTCTGCGAGGCGCTCTCCGGCCTGGGCGCCTGGGTCC GTCTGCACTACGTCTACCCCTACCCGAACGTCGACGACGTCATCCCGCTGATGGCCGAGGGCAAGATCCTGCCCTACCTGGACATCCCCTTCCAGCACGC CAGCCCCAAAGTGCTCAAGGCCATGAAGCGACCGGCCTTCGAGGACCAGACCCTGGCGCGCATCAAGCGCTGGCGCGAACTCTGCCCGGAGCTGACCATC CGCTCCACCTTCATCGTCGGCTTCCCCGGCGAGACCGAAGAGGACTTCCTCTACCTGCTGGACTGGCTGAGTGAAGCCCAGCTGGACCGCGTCGGCTGCT TCCAGTACTCCCCGGTGGAGGGCGCGCCGGCCAACGACCTGGGCCTGCCGCAGGTGCCGGACGACGTCAAGCAGGAGCGCTGGGAACGCTTCATGGCCCA CCAGCAGGCGATCTCCGCCGCGCGCCTGCAGCGCAAGATCGGCAAGGAGATCGAGGTGCTGATCGACGAGGTGGACGAACAGGGCGCGGTGGCCCGCTCC TGGGCCGACGCCCCGGAGATCGACGGCAGCGTGTTCGTCAACAGCACCACGGTGAAGCCCGGCGACAAAATCCGCGTACGGGTCACCGACGCCGACGAGT ACGACCTCTGGGCCGAGCCGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGACGCCCCCAAAGGAAGCCCCGCCGCTGCGGGGCTTTTTTATGCACGGTCGAATGAGCATCCAAGCCGAAACCTTGCCGCGCATGTCTAGATGGCTGC TTTCCACACAGCCACCAGGCCGCGGCAGGCCGCACGCTTTGCTTATGCCCAATCCGCGCCGTTGTAGCAGGATGGCTTACCAGGGGTCACGCTCGCTAAC ATGCGCGGACCTCCCTGCACGTGTGCCGTTATGCCTTTCTCTGTTACCCCCATCGGCTTCGTCCGCTCCTGCTTCAAGGAGAAGTTCGCCATCCCCCGCC AGCCGCGCCTGGCCCCGGCCGCTCGTGGCGTGTTGGAGCTGCTGGCGCCCTTCGACCGCGCCGAGGCGGTAGCCGGGCTGGAGCAGGTCAGCCACGTCTG GCTGCTATTCCTGTTCCACCAGGCGCTGGAGGACAAGCCGCGCCTCAAGGTGCGCCCGCCGCGCCTGGGCGGCAACCGCCAGCTGGGGGTGTTCGCCACC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVGTYQDADVVVVNTCGFIDSAKAESLEVIGEAIAENGKVIVTGCMGVDENNIRGVHPSVLAVT GPQQYEQVVSAVHEVVPPKAEHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLGEAERLVKAGVKELLVISQDTSAYG VDLKYKTDFWNGQPVKTRMKELCEALSGLGAWVRLHYVYPYPNVDDVIPLMAEGKILPYLDIPFQHASPKVLKAMKRPAFEDQTLARIKRWRELCPELTI RSTFIVGFPGETEEDFLYLLDWLSEAQLDRVGCFQYSPVEGAPANDLGLPQVPDDVKQERWERFMAHQQAISAARLQRKIGKEIEVLIDEVDEQGAVARS WADAPEIDGSVFVNSTTVKPGDKIRVRVTDADEYDLWAEPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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