Pseudomonas thermotolerans DSM 14292, H165_RS0103135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006402 mRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.230.70:FF:000002 Polyribonucleotide nucleotidyltransferase - - 237 551 0.0
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 295 490 9.11E-50
SMART SM00322 kh_6 IPR004087 K Homology domain 554 619 7.9E-15
Pfam PF00013 KH domain IPR004088 K Homology domain, type 1 560 615 7.6E-13
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 622 692 1.2E-25
FunFam G3DSA:2.40.50.140:FF:000023 Polyribonucleotide nucleotidyltransferase - - 624 694 6.5E-33
CDD cd04472 S1_PNPase - - 624 691 5.00321E-35
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 3 144 1.06E-47
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 15 144 2.7E-18
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 145 237 2.09E-28
Gene3D G3DSA:3.30.1370.10 K Homology domain, type 1 IPR036612 K Homology domain, type 1 superfamily 552 623 5.1E-30
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 621 692 5.8E-18
CDD cd02393 KH-I_PNPase - - 553 622 2.41628E-29
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 326 458 3.2E-22
NCBIfam TIGR03591 JCVI: polyribonucleotide nucleotidyltransferase IPR012162 Polyribonucleotide nucleotidyltransferase 9 694 0.0
CDD cd11364 RNase_PH_PNPase_2 - - 325 546 0.0
SUPERFAMILY SSF46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily 240 322 3.66E-17
Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain 243 322 1.7E-24
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 622 698 2.96E-21
Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. IPR012162 Polyribonucleotide nucleotidyltransferase 2 695 30.492945
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 1 236 5.4E-84
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 237 551 0.0
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 452 550 2.09E-30
FunFam G3DSA:3.30.230.70:FF:000001 Polyribonucleotide nucleotidyltransferase - - 2 235 4.0E-103
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 461 530 5.2E-6
PIRSF PIRSF005499 PNPase IPR012162 Polyribonucleotide nucleotidyltransferase 1 701 0.0
SUPERFAMILY SSF54791 Eukaryotic type KH-domain (KH-domain type I) IPR036612 K Homology domain, type 1 superfamily 558 642 5.69E-24
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 624 695 3.1E-27
CDD cd11363 RNase_PH_PNPase_1 - - 5 234 1.10315E-111
PANTHER PTHR11252 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE IPR012162 Polyribonucleotide nucleotidyltransferase 3 697 0.0
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 147 211 9.1E-12
FunFam G3DSA:3.30.1370.10:FF:000001 Polyribonucleotide nucleotidyltransferase - - 552 620 7.0E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.