Pseudomonas cremoricolorata DSM 17059, H618_RS0120540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCTCCCGCAACCAAATATAGAAAGGCCACTGCACATGCAGTGGCC TTTTCTTTTGTGGGTAGGCAGCTGTCCATAGCACCACTTGATAGCATCTGCGAGGAAAGCGTTTGACAAGCGCACAAGAATCCGTAGAATTCGCCCCTCT GACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCTCCCGCAACCATATTCGTCAGAACAAGCCCCG CCTGTCGCAAGACAGTGCGGGGCTTTTCGTTGTGGCCGCTTTACGGGGCCATAACCAGCACGCAGCACCATCCTTTGGATGAATGAACTATCTTTAACGC TGCCGACTTAGAGCCGGAGTAGTATCTGGATACTTTTTCAAAGGGACTTTCACTTGGCCGCACCATGCCCCCCACTCGCGCGCTTAGCACGAGGCTATTC
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| DNA Sequence for Gene |
>H618_RS0120540
ATGACCTCCCCTACCCCAGAATCGCCGACGCCGCTGACTGCGGCACTACCGGCCGCTGCCCAGCGTTTGCCGTGGCTGGAGCGCATGAGCAAATACCGCC AACCGCTTGGCCTGGCGCTGACCCTGGTGTTGTTCGCCATGGCCCTGGTCGCTTGCCGGCACCTGCTCAGCGAGCTGGATATCTACGCGCTGCATGACGC CATGCTTAGCGTGCCCGGCAGTGCACTGACCGGTGCACTGCTGGCGACGGTGGCGGGCTTCATCATCTTGCTCGGTTATGAATGGTCAGCTGCACGCTAT GCCGGCTGCGCACTGCCTGCGCGTACGCTGGTGATGGGCGGCTTGAGCGCGTTCGCCATCGGCAATGCCATCGGCCTGTCGATGCTCTCGGGCGGATCGG TGCGTTATCGGCTGTATGCCCGCCATGGCCTGGGGGCTGCGGAAGTGGCGCGGATGACGGTATTCGCCAGCCTTTCGCTCGGTGGTGCGCTACCGCCTCT GGCAGCACTGGCGACCCTCAGTGACCTGGGCGCGGCGTCGGCTGCGCTGCGGCTTTCACCGGTGTTGCTGGGCAGCATCGCAACGGCTGTGTTGCTGCTC AGCGTGGTGCTGGTGGTGGGCCTGTATCGCCGCCGCCTGGCCGAGCAACCGTCGAAAGATAATCTGCTGGTGGCCCTGGGCCGGCGCACCTTGCGCCTGC CCAGCGGCCGTCTGGCAGTGCTGCAGTTGCTCATCACTGCGCTGGATGTCGCGGCTGCGGCCACCGTCCTTTACCTGCTACTGCCAGAAGCACCGCCCTT CGGCGCCTTCCTGATGGTCTACCTGCTGGCTCTGGCCGCCGGCGTGCTCAGCCATGTACCTGGCGGCGTGGGTGTGTTCGAAGCCATCCTGCTGGCCGCC TTCGCCAATCAACTGGGCGCCGCACCGCTGGCCGCAGCGTTGCTGCTGTATCGCCTGATCTACGTCGTGCTGCCGTTGCTGCTGGCCTGCGTGGCGCTGC TGATCAACGAAGCTCGCCGCTTGTTGTTCGCCCAGCACGCGATTCGGGCAGCGTCCGGCCTGGCCGCGCCGGTACTGGCGATTCTGGTGTTTCTGTCCGG GGTGGTGCTGCTGTTCTCCGGTGCCACGCCTGAGATCGACACCCGCCTGGAGCACATGGGCTTTCTGGTACCGCACCGGCTGATCGACGCTTCGCACTTC GGCGCCAGCCTGATCGGCGTGCTCTGCCTGCTGCTCGCCCAGGGCCTGCGCCGACGCCTGTCGGCGGCCTGGCTGCTGACCACCGTGCTGCTGCTGATGG GCGCACTGCTGTCGCTGCTCAAAGGTTTCGACTGGGAAGAAGCCTGCATCCTGATCGCCACCGCCGCCCTGCTGGCGTTGTTCCGCCGCTCGTTCTATCG CCCCAGCCGGTTGCTCGAGCTGCCGTTCTCACCGGTGTACCTGGTGGCCAGCGCCTGCGCGGTCGGTGCTTCGATCTGGCTGTTGCTGTTCGCCTATCAG GACGTGCCCTACAACTCGCAATTGTGGTGGCAGTTCACCCTCGACGCCGATGCCCCGCGGGCGCTGCGGGCGGCCATGGGCAGCGCGGTGTTGCTGGTGA TCGTCGCGCTGACCTGGCTGCTGCGCACCGCGCGCCCGGTCATCCACTTGCCTGACCAGGCCGAACTGCAACGCGCCAGCAACATCCTGATGGCCTCCGA TCAGCCTGATGGCGGCCTGGCGCTCACCGGCGACAAGGCGTTGTTGTTCCATCCTGATGACGACGCTTTCCTCATGTACGCCCGCCGCGGTCGCAGCCTG GTGGCGCTGTACGACCCGATCGGCCCGGCGCAGGAACGCGCCGAGATGATCTGGCAGTTCCGTGACCTGTGCGACCTGCACCACGCCCGCCCGGTGTTCT ACCAGGTACGCGCCGAGAACCTGCCGTTCTACATGGACATCGGCCTGACCGCGATCAAGCTGGGCGAAGAGGCACGCGTCGATCTGCGCCGCTTCGACCT CGAAGCCAAGGGCAAGGAGATGAAAGACCTGCGCTACACCTGGAACCGCGGCGGGCGTGATGGCCTGACGCTGGAGGTGCACGAGCCGGGTCAGGCGCCG ATGGAGGCGCTCAAGGAAATCTCCGACGCCTGGCTCAGCGGCAAGAACGTGCGTGAGAAAGGCTTCTCGCTCGGGCGCTTCAGCGCCGAGTACCTCAAGT ATTTCCGCATCGCCCTGATCCGTTTCCAGGGCCGTCCGGTGGCCTTCGCCAACCTGCTGGAAACCCACAGCAACGAACTGGCCAGTCTGGACCTGATGCG CGCGCATCCCGACGCGCCCAAGTCGACCATGGAGTTCATGATGATCGGCCTGATCCTGCACTACAAAAGCCATGACTACGGGCGCTTCAGCCTGGGCATG GTGCCGCTGTCCGGACTGCAGCCACGCCGCGGTGCACCGCTGACCCAGCGCCTGGGTTCAATGGTGTTCCAGCGCGGTGAGCAGCTCTACAACTTCCAGG GGTTGCGACGCTTCAAGGACAAGTTCCAGCCCGACTGGGAACCCCGCTACATGGCAGTGCCCGCCGGACTCGATCCGCTGGTGGCACTGGCTGATACCGC TGCCCTGATTGCAGGCGGCCTGACTGGATTGGTGAAACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGATTCGACGTTACTGGTTGTACCTGGTCATTGCCTTGGCCGTGGCCGCTGCGGCGGCGAGCCTGGCGTTCTGGCTGTGGACTCGTCCGGCTCCCGAAGC CCATGCCGAGCACCTCACCTTGAGCGATGGCAGCAGCGCGGTGCGCGCCACCCCTGGCGTTCACGCCAAGGCCCTGGTAGCCATCGGTGTACCGCAGGAG CAGGCGCTCAGCGACAAGCAACTGCTCGACCTGAGCCAGGCCGGCGAAGCGCAGTTGGTGCAGGTGATTCTGCCTGCCGGCGACTGCACCCAGCAGCAAC AGGCGATGACCCAGGCCATCGCGCAACTGCCCGGCGCGCCCACCGTGGTTGCCGGTATCGGCCCAGGTGCGGCGCAGGCCTGGCGCTGGCTGGCCACGCA GAACGACGACAAGGCCCGGGCCATTTCGGTCGACTTCACTCTGGAGCAGCCCGGCTGCAGCTCACCGCTGCCCAAATCTGCAGCCCACGGCCATTGGAAC
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| Amino Acid Sequence |
>membrane protein
MTSPTPESPTPLTAALPAAAQRLPWLERMSKYRQPLGLALTLVLFAMALVACRHLLSELDIYALHDAMLSVPGSALTGALLATVAGFIILLGYEWSAARY AGCALPARTLVMGGLSAFAIGNAIGLSMLSGGSVRYRLYARHGLGAAEVARMTVFASLSLGGALPPLAALATLSDLGAASAALRLSPVLLGSIATAVLLL SVVLVVGLYRRRLAEQPSKDNLLVALGRRTLRLPSGRLAVLQLLITALDVAAAATVLYLLLPEAPPFGAFLMVYLLALAAGVLSHVPGGVGVFEAILLAA FANQLGAAPLAAALLLYRLIYVVLPLLLACVALLINEARRLLFAQHAIRAASGLAAPVLAILVFLSGVVLLFSGATPEIDTRLEHMGFLVPHRLIDASHF GASLIGVLCLLLAQGLRRRLSAAWLLTTVLLLMGALLSLLKGFDWEEACILIATAALLALFRRSFYRPSRLLELPFSPVYLVASACAVGASIWLLLFAYQ DVPYNSQLWWQFTLDADAPRALRAAMGSAVLLVIVALTWLLRTARPVIHLPDQAELQRASNILMASDQPDGGLALTGDKALLFHPDDDAFLMYARRGRSL VALYDPIGPAQERAEMIWQFRDLCDLHHARPVFYQVRAENLPFYMDIGLTAIKLGEEARVDLRRFDLEAKGKEMKDLRYTWNRGGRDGLTLEVHEPGQAP MEALKEISDAWLSGKNVREKGFSLGRFSAEYLKYFRIALIRFQGRPVAFANLLETHSNELASLDLMRAHPDAPKSTMEFMMIGLILHYKSHDYGRFSLGM VPLSGLQPRRGAPLTQRLGSMVFQRGEQLYNFQGLRRFKDKFQPDWEPRYMAVPAGLDPLVALADTAALIAGGLTGLVKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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