Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCAGCAGGATGCGCTCGGCCTTGAGCCCCGGCAGGCTGTGCAGCAGCAGGGTCTGGCCCGGCTTGCCGCCGAGGTCGCCGCGCTTGAGCACGGCGCTGAT CGCGCCACCGCTGGCAAGATCGATGGCCTGGGCCGTATCGCCGAGCACGCGACCTTCGCCCACGGCGAGCACCAGCGTTGCGGTTTTCACGGATGCAGCG TTGAGGCTCTTTACAACCAGTTCCATAGTTCGCTCCCCAGTAGATCGTGCAATCGGCGCGGTGCCGTGCAAGCCTGGCCGCCAGTGTGCGGTCCAGTGGA AAAGCTGCCAGTTTGAGCCTCTGGCATCCATGCTGACAACCCCGACCTGCGCTGCTGCGCGAGGCCAAGTGACAGGCGCGGCCAATCACAGGATAATGCG CCCACTTTACAGTCGGCTGGCTCAGGCGAACCGGCTATGATCCTGATTGTCCGATTTCCTTGTCTGGCACTTCGCCCCTGACAACCCAGGAGTTTCTGGT
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DNA Sequence for Gene |
>H618_RS0119445
TTGATCGTCTTCCGTTATCTGTCTCGCGAGGTCCTGGTGACCTTGAGCGCCGTCAGCGCCGTGCTGCTGGTGATCATCATGAGTGGGCGCTTCATCAAGT ACCTGGCCCAGGCGGCCCAGGGCGTACTCGATCCCGGCGTGCTGTTCATGATCATGGGCTTTCGTCTGCCCGGGTTCCTCCAACTGATCCTGCCGCTGGG CCTGTTCCTCGGCATTCTGCTGGCCTATGGCCGGTTGTACCTGGAAAGTGAAATGACCGTGCTGGCCGCCACCGGCATGAGCCAGCAGCGTCTGCTGGCC ATGACCATGGCCCCGGCCGGTCTGGTCGCGCTGCTGGTGGCCTGGCTGAGCCTGAGCCTGGCGCCCCAGGGCGTTTCCCAGGTGCAGCAGATCATCAACC AGCAGGACGCCCTGACCGAGTTCGACACCCTGGTTCCGGGCCGTTTCCAGACCCTGCGCGATGGCACCCGGGTGACCTACACCGAGCAGCTGTCCGATGA CCGGGTCAAGCTCGACGGTGTGTTCATCTCGGAAAAGCGCTTCAACCAGGACAAGAGCAAGGATCGTCCGCCGACCGTGCTGGTCGCCGAGCGTGGCCAC CAGGAAGTGCAGGCCGACGGCAACCGCTACCTGGTGCTGGAAAACGGCTACCGCTACGACGGCAACCCAGGCGAAGCCGGCTACCGCGCGATCAAGTACG ACACCTACGGGGTGTTGCTGCCCAAGCCTGAGGTCAATGAAGAGGTGACCGAGCGCGAGGCCATTCCGACCCTGCAACTGTTCGGCGAGGACGGCCTGCG CGAGCGTGCCGAATTGCAGTGGCGTCTGTCGCTGCCGATTCTGGTGTTCATCGTGACTCTGATGGCCGTACCGCTGGCCCGGGTCAACCCGCGTCAGGGG CGCTTCCTCAAGCTGCTGCCGGCGATTCTTCTGTACATGGCCTACCTGACGATGCTGATTTCCGTACGCGGCGCCCTGGAGAAAGGCAAATTGCCGATCG CCCTGGGCATGTGGTGGGTGCACGGCCTGTTCCTGCTCATCGGCCTGGCGCTGATGTACTGGGAGCCACTGCGCCTCAAACGTGCTGCCCGTCGTGCGGA GGTGGCCCGTGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACTCGATCGCTACATCGGCCAGAGCGTGCTGCTGGCGATTCTTGCGGTACTGGGCATCATCCTCGGCCTGGCCTCGCTGTTCGCCTTCATCGATGAAATG GGCGATCTGAGCAACACCTACACCCTGGGCGATGCCTTGATGTACGTGCTGCTGACCGCGCCTAGACGTGTCTACGACATGCTGCCCATGGCTGCGCTCA TTGGCTGCCTGATCGGCCTTGGCAGCCTGGCCAGCAGCAGCGAGCTGACCATCATGCGCGCTGCCGGGGTGTCCATCGGGCGCATCGTCTGGGCGGTCAT GAAACCTATGCTGGTGCTGATGCTGGCCGGCGTGCTGATCGGCGAGTACGTCGCCCCGGCAACCGAGAACAAGGCCCAGGCCGACCGCTCGCTGGCTCAG GGTGGCGGCGAGGCGCTGAGTTCCAAGCGCGGCATGTGGCACCGTCAGGGCGAAGAGTACGTGCACATCAACTCGGTACAGCCCAATGGCCTGCTGCTGG
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Amino Acid Sequence |
>permease
MIVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFMIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLAATGMSQQRLLA MTMAPAGLVALLVAWLSLSLAPQGVSQVQQIINQQDALTEFDTLVPGRFQTLRDGTRVTYTEQLSDDRVKLDGVFISEKRFNQDKSKDRPPTVLVAERGH QEVQADGNRYLVLENGYRYDGNPGEAGYRAIKYDTYGVLLPKPEVNEEVTEREAIPTLQLFGEDGLRERAELQWRLSLPILVFIVTLMAVPLARVNPRQG RFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVHGLFLLIGLALMYWEPLRLKRAARRAEVARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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