Pseudomonas cremoricolorata DSM 17059, H618_RS0116930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00014.14_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGCGCGGCGTGTGGGTGGCAGGCGCGGCAGCACGCTCGGCCGCGAACGGGGCAGTGACGGCCTTGGCGGCTCGGGCCTGCTGACGCAGCTCGGCCAGT GACGGCGCCTTGGCCACCTGGGTGACGGCGGGCTTGAGCAGCGAGCGCTGGCACGACTTGCACGACACCTCGTCGCTCACGGCGGTGCTGACCAGCGTCT GGGCGCGACGCCCGCAGACAGCCTCCAGGCCATTGGGGGAATAGTGGGTAACCAAAACCAGGCTTCTCCAGGAACACGTGCATTGAAACGGCCGGCATTC TCGCACACCCACCGCTCGATGCCGACCCGACCGGACGGGCAGGACAGAACTCTGGCACTTTGCCATAATGCGACGCCCTGTTTCGCAGCAGACTAGTCTG GGGTCAGCGCGCCGTCTTATAGTGCGCCGGCTTCGTTCATGCCCTGGCTCAGCCGCCAGGCGTTTCCCTGCCATCGCCAGCCCCTTTGCAGGATGAGCGC
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| DNA Sequence for Gene |
>H618_RS0116930
GTGACCCACTTCACCTCACCTTCAGCCCAGCTTCCGGCGGTTCCCGTCAAGGCACTGGGTGGCTCGCTCAAGGGCGCACTGGCGCTGCTCGTGCTGGTGC TGCTGGGCCTGCTCGTGTGGCAGTTGTTCGCCCAGTACCGCGCCACGCAACTGGAGCAGCGCGAGCAAAGCCTGGGCGCCAGTGCCGAATTGGCCGATCA CCTGGAATTGAACCTGGCGCTGCGCGCCCAGCAAGCGCTGACGATGCTGCAACTCTATGTCGACGTCCCGCTCGGCGACGCCGCCGATGGCGCGTTGCTG CAATTGCAGGCACGCCTGCCGGCGCTGCAGGGCCTGGCCTGGCTGGACGACGCTGGCCAGGTGCAGGATGACAGCCAGTTCGGCGGCGCAGAGCGCAGCA CCATCGACGAGCTGCTCAGCCTCGGTGCTCGGCGAGCGTTCTTCTACAGCAATTCCGCCGACGGGCACACCCTGTACCTGCTGTTGCCACGGGCCGCCCA CGGCGAGCGCAACGGCACGGGCGGGCACTGGCTGCTGCGGTTGTCCAGCGACTACCTGTACAGCCTCACCCAGCGCCTGGACGGCCCCAGTTCGCCCTTG TGGCTGCTGGAAAACAGCCGCAGCGGCGACCGGCTCGCGCAGCATCCGGCGATCAGCGACGCCGCGCCACTGGACAGCGTGCTGCTGAGCTTTCTGGACA ACAGCAACTGGCAACTGCGTGGGCTGTTCGACGCCGTGCAGGCGCGCAACCAACTGCTGCCGGCGTTGATCGGCAAATGCCTGCTGGTGCTGCTGTGCGC CTCGCTGCCGGTGCTGGCGCTGTTCAACCTGCGTCGCCGCCAGCGCACCCTGCAGGACGAACGGCGACGTTACCACGACATCTTCGAAGGCACCGGGGTG GCGCTGTGCGTGCTTGACCTGTCCAGCCTGCCCGGGCAACTCGAGCGCCACCACCTGAGCAACCGCGCCGGTCTGCGCCACAGCCTGGCGCTGGACCCGA ATCTGCGCCGCGCGCTGCTTCAGCAATTGAAAATCACCGAGACCAATCAGGTTGCCCGCCAGTTGCTTGAGGTCGAGTGCAACGACCGCGCCTGGCAACG TCTGATCGAAGGCAGTGGCGATGGCCGCGACAGTGTCGGCATGCAGCTCATCGATGCCGTGCTCGAGCGCCGCGAGCAACTGGAACTGGAAGTGCGCCTG CCCACCGGCCAGGGCGGCGATGTGCACCTGTGGCTGATGGTGCGTCTGCCCGAACCGCGCGACTACCACGCGGTCATCCTCAGCATCAGCGATATCACCA GCCGCAAGCAGGTCGAGCTGTCGGCGCTGGAGCGTGAGAGTTTCTGGTCGGATGTGGTGCGCACCGTGCCGGACCAGCTCTACGTGCAGGACGTGCTCAG CCAGCAGATGATCTTCAGCAATCGTCACCTCGGCCAGACCCTGGGCTACAGCCGCGCCGAGCTGGCGCAAATGGGCGATCGCTTCTGGGAAATGCTCATG CACCCGGACGACGCCGAGCGCTACCGCGCCCAGCGCTGGCACCTGCGCCGCGATGACGAGCAGCCGCTGCACTACCATTCGCGCTTCCGTCACCACGATG GCTCGTGGCGCTGCTACGACATCCGCGAGCAGGTGCTGACCCGTGACGCTGCGGGCCAGATCACGCGGATCATCGGCGTCGGCAAGGATGTCACGGTGCA GATCGAAGCCAGCGAGTCGCTGCGCGACAGCGAACAGCGCTACCGCATGCTCGCCGAGAGCATCAGCGACGTGATTTTCTCCACCGACAGCCAACTCAAG CTCAACTACGTCAGCCCGTCGGTAAAAGTGGTGCTTGGCTACGAGGTGGAGTGGATTTTCAGCAACGGCTGGCAGTCGACCATCGCCAATCCGGCGCAGC TCAGCGGCGTGCTCAAGCTGGTCGAACAGGTCACCAGTGCCCTGGGCAACCTCGAGCAACTGGCGCGCCTGCGTAGCGACCTGCCGACCCAGTTGTTCCT GTTCGACTGCCTGCGCGCCGATGGGCGCAAGATTCCCATCGAGCTGCGCGTGGTGCTGGTGTGGGACGAGCATGGCGGCTTCGAAGGCATTCTCGGCGTG GGCCGCGACATCAGCCAGCAACGGCGCGCCGAAAAAGACCTGCGCATGGCCGCGACGGTCTTCGAGCACTCCACCTCGGCCATTCTCATCACCGACCCGG CCGGCTACATCGTCCAGGCCAACGAAGCCTTCAGCCGCGTCAGTGGCTATGCCGTGAGCGATGTGCTCGACCAGTTGCCGGGCATGCTGGTGGTCGACAG CCAGCAGGAAGCGCATCTGCGCTACGTGCTCAAGCAGTTGCACCAGCGCGGCAGCTGGGAGGGCGAGGTGTGGCTCAAGCGCCGCAGTGGCGAGCACTAC CCCGCCTGGGTCGGCATCACTGCGGTGTTCGACGACGAAGGCGATCTGGCCAGCTACGTGTGCTTCTTCACCGACATCAGCGAGCGCAAGGCCAGCGAAC AGCGCATCCATCGCCTGGCCTACTACGACGCCCTGACCCACCTGCCCAACCGCACGCTGTTCCAGGATCGCCTGTATACCGCCTTGCAACAGGCGCAGCG CAACACCTCGTGGGTGGTGCTGATGTTCCTCGACCTCGACCGCTTCAAGCCGATCAACGATTCGCTCGGCCACGCTGCAGGCGATCGCATGCTCAAGGAC ATGGCCGAGCGCCTGCTGGCCTGCGTTCACGATGACGACACCGTGGCGCGCATGGGCGGCGACGAATTCACCCTGCTGCTGCAACCACGGCCCAGCCGCG AAGCCTCGCTGACCCGGGCGATTCATGTGGCCGAGAACATCCTCGCCAGCCTGGTGCGGCCGTTCGTGCTGGAGAACCGCGAGTTCTTCGTCACCGCCAG CATCGGCATCGCCCTCAGCCCGCAGGATGGCAGCGAACTCAGCCAACTGATGAAGAACGCCGACACGGCGATGTACCACGCCAAGGAACGCGGCAAGAAC AATTTCCAGTTCTATCAGGCCGACATGAACGCCAGCGCCCTGGAGCGTCTGGAACTGGAAAGCGATTTGCGCCACGCCCTGGAGCAGAACGAGTTCGTGC TGTATTACCAGCCGCAGTTCAGCGGTGATGGCAAGCGCCTGACCGGGGCCGAAGCCTTGCTGCGCTGGAACCATCCACGGCGCGGGCTGGTGCCGCCGGG GGAATTCATTCCGGTGCTCGAAGAGCTGGGCCTGGTGGTGGATGTCGGCGACTGGGTGCTGCGCGAGGCCAGCCGCCAGTTGCGCGCCTGGCGCGAGGCC CGCGTGCGAGTGCCCAAGGTGGCGGTCAACCTGTCGGCCCGGCAGTTCTCCGACGGCCAGCTGGGCACGCGCATCGCCGGCATTCTGGAAGAAAGCGGTC TGTCGCCGGCCTGCCTCGAGCTGGAATTGACTGAAAGCATCCTGATGCGAGAAGTCGACGAAGCCATGCAGATTCTCGCCAGCCTCAAGCAACTGGGCCT GAGCATCGCCGTGGATGACTTCGGCACCGGCTACTCGTCGCTCAACTACCTCAAGCAGTTCCCCATCGACGTGCTGAAGATTGACCGCACCTTCGTCGAC GGCCTGCCCTGCGGTGAACAGGATGCGCAGATCGCCCGCGCGATCATCGCCATGGCCCACAGCCTGAACCTGTCGGTGATCGCCGAAGGCGTGGAAACCC ACGAGCAACTGGAGTTTCTTCGCGAGCACGATTGCGACCAGGTGCAGGGCTACCTGTTCGGCCGCCCCATGTCGGCCCGCCAGTTCGAAGCGCAGTTCAG CAATGAAGCGCTGTTCATGCTGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCAGCTGCTAGCTGCAAGCGGCAAGTTGAAGCAGTACGGCTTTTTCTTGTCGCTTGAAGCTTGAAACTTGAAGCTTCAAGCTTGCCGCTGCCCAATGCT GTAGAATGCTGCCCCTTTCCCGCCCGATCCTTGAGGACCGCCATGTTCAGCCGTGATTTGACCATTGCCAAGTACGACGCAGAGCTCTTCGACGCCATGC AGCAGGAAGCGCTGCGCCAGGAAGAGCACATCGAGCTGATCGCTTCGGAAAACTACACCAGCCCCGCCGTCATGGAAGCCCAAGGCTCGGTGCTGACCAA CAAGTACGCCGAAGGCTACCCAGGCAAGCGCTACTACGGCGGTTGCGAGTATGTCGATGTGGTCGAGCAACTGGCCATCGACCGTGCCAAGGAACTGTTC GGCGCCGATTACGCCAACGTTCAGCCCCACGCCGGTTCCCAGGCCAACGCCGCGGTCTACCTGGCCCTGCTGTCGGCCGGTGACACCATCCTCGGCATGA
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MTHFTSPSAQLPAVPVKALGGSLKGALALLVLVLLGLLVWQLFAQYRATQLEQREQSLGASAELADHLELNLALRAQQALTMLQLYVDVPLGDAADGALL QLQARLPALQGLAWLDDAGQVQDDSQFGGAERSTIDELLSLGARRAFFYSNSADGHTLYLLLPRAAHGERNGTGGHWLLRLSSDYLYSLTQRLDGPSSPL WLLENSRSGDRLAQHPAISDAAPLDSVLLSFLDNSNWQLRGLFDAVQARNQLLPALIGKCLLVLLCASLPVLALFNLRRRQRTLQDERRRYHDIFEGTGV ALCVLDLSSLPGQLERHHLSNRAGLRHSLALDPNLRRALLQQLKITETNQVARQLLEVECNDRAWQRLIEGSGDGRDSVGMQLIDAVLERREQLELEVRL PTGQGGDVHLWLMVRLPEPRDYHAVILSISDITSRKQVELSALERESFWSDVVRTVPDQLYVQDVLSQQMIFSNRHLGQTLGYSRAELAQMGDRFWEMLM HPDDAERYRAQRWHLRRDDEQPLHYHSRFRHHDGSWRCYDIREQVLTRDAAGQITRIIGVGKDVTVQIEASESLRDSEQRYRMLAESISDVIFSTDSQLK LNYVSPSVKVVLGYEVEWIFSNGWQSTIANPAQLSGVLKLVEQVTSALGNLEQLARLRSDLPTQLFLFDCLRADGRKIPIELRVVLVWDEHGGFEGILGV GRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSDVLDQLPGMLVVDSQQEAHLRYVLKQLHQRGSWEGEVWLKRRSGEHY PAWVGITAVFDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYTALQQAQRNTSWVVLMFLDLDRFKPINDSLGHAAGDRMLKD MAERLLACVHDDDTVARMGGDEFTLLLQPRPSREASLTRAIHVAENILASLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKN NFQFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWNHPRRGLVPPGEFIPVLEELGLVVDVGDWVLREASRQLRAWREA RVRVPKVAVNLSARQFSDGQLGTRIAGILEESGLSPACLELELTESILMREVDEAMQILASLKQLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVD GLPCGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLREHDCDQVQGYLFGRPMSARQFEAQFSNEALFMLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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