Pseudomonas cremoricolorata DSM 17059, H618_RS0106055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTGCTGGCCGCTCAGTACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCTATCACCGGGGTGA TCCTGGCCGGTAGCGACAACAACATCTTCACCCAGATCGGCCTGATCGTGCTGGTGGGCCTGGCATGCAAGAACGCCATCCTCATCGTCGAGTTCGCCAA GGACAAACAGGCCGAGGGCCTCGACCCGCTGGCTGCGGTGCTGGAAGCCTGCCGCCTGCGCCTGCGGCCGATCCTGATGACCTCCATCGCCTTCATCATG GGCGTGGTGCCCCTGGTGCTGTCGTCCGGTGCCGGTGCCGAGATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGATCGGGGTGACCTTTTTCG GCCTGTTCCTGACCCCGGTGTTCTTCTTCCTCATTCGCCGTTACGTCGAGCGCCGCGAGGCGCGCAAGGCCAGCCACGCGCCGGCGCTGGAGAGCCATCC
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| DNA Sequence for Gene |
>H618_RS0106055
ATGAATCTGTTGAAAGCCTTCGCCCCTGCCCTGCTGGCCCTGGCCGTGTCTGCCTGTGCAGTGGGCCCGGACTACCGGGCACCGCAACCGGCCCCCGCGC AACTGGACACCCAGGCGCAGACCTTCGACCGCAGCCGCTTCGAGGCGCAGTGGTGGCAGCAGTTCGAGGACCCGGTGCTGAACCAGTTGGTCAGTGCCTC GCTGGACGGCAACCGTGACCTGCGCGTGGCCTTCGCCCGGCTCAAGGCAGCGCGTTCGCTGCGCGAAGAAGCCAGCCTCGATCAGTTTCCGGTGGTCACC AGCCGTGCCAGCAGCGAAATCGGCAAGGGCCAGGTGCCTGGGCAGACTGAACAACGGGTGAATCAAGAGCGCTATGACCTGGGCCTGGACATGGCCTGGG AGATCGACCTGTTCGGCCGTATCCAACGGCAGATCGAGGCCAGCCGCGCCCAGGAAGACGCCGCTGCGGCCGACTTGCAACAGTTGCAGGTCAGCCTGAT CGCCGAGCTGGTGGATGCCTACGGCCAGTTGCGCGGCGCTCAGCTGCGCGAGCGGATCGCCAACGACAACCTCAAGACCCAACAGCAGTCGCGACAGATC ACCGAAACCCTGAATGAGGCCGGTGTCGGCAACGAACTGGACGTGGTGCGCGCCGAGGCGCGTCTGGCTGGGGTCGAAGCCACCCTGCCGCAGTTGCAGG CCGAACAGGTGCGCGCACGCAATCGCATCGCCACCCTGCTCGGCCAGCGCCCCGAGGCGCTGAGCGTCGATCTTGCGCCCAAGGCCCTGCCGGCAATCGC CAAGGCCTTGCCGGTGGGCGACCCCGGCGAGCTGCTGCGCCGGCGCGCCGATATCCGCAGTGCCGAGCGGCAACTGGCGGCAGCCACCGCCAACATCGGC GTTGCCACGGCGGATCTGTTCCCGCGGGTCAGCCTCAGCGGGTTCCTGGGTTTCACCGCAGCGCGCGGCTCGCAATTGGGCAGCTCGGCGGCCGGTGCCT GGGCACTGGGGCCGAGTATCCAGTGGGCGGCGTTCGACCTGGGCAGCGTGCGCGCCCGTCTGCGCGGCGCCAGGGCCGACGCCGAAGGTGCGTTGGCCCG CTATGAACAGCAGGTGCTGCTGGCATTGGAAGAGTCGTCCAATGCCTTCAGCGACTACGGCAAGCGCCAGCAGCGCCTGCTGGCGCTGATACGCCAGAGC GAAGCCAGCCGTAAAGCCGCACAGCTGGCTTCGGTGCGCTACCGCGAAGGCAGTGTCGACTACCTGGTGCTGCTCGATGCCGAGCGTGAGCGCCTGGCGG CAGAAGATGCGCAGGCACAGGGCGAAGTGGCGCTTTACCAGGGAATCGTCGACATCTACAAGGCCTTGGGCGGCGGCCTGCAGCCGGCGGTAGTGGCCAG CGCCCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTGCTTGGCGAACGCTCTCGCCTCCCTAGACGAGGGCGCGAGCCCGTTTACAAGGACGGACGACCTCAGAGAAGGCGAGCACGGCGCTGACGCCCTGCT TCGCCCCGTTTGGCATTGCCTAGCCGTTGCGCTGACAAGGCCGGGCGGGAGCAGGCGGGGGCATTGGGGGAGCTCCCAGCCCCACGGTCAAGGCATCTTA CGCACTCCTTTAGTCCAATCCACAATATCCAATGCGCTGGCTACTGCAGCGAGCTTCATGTCGTACACCAATTTAGGGACCTCTGATGGGGCAAAAAGCG AATTCGAACCTCTGCAGAACATCGCACCGACGTAGTCGTAGCTGTAGCCATGCGCGGCCAATGTGCTTAGCACGGAATCGAAAGTGGCCTGACCCTGCAG TGCGACGTAGTCGACGCCCTCGCTAACCGCGTACCCGCCAATGACATCGTTAATTTGTTGCGCTGTTTTTCCCTCTAGCCCAGGAAGCTCGGTGATCAGG
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| Amino Acid Sequence |
>RND transporter
MNLLKAFAPALLALAVSACAVGPDYRAPQPAPAQLDTQAQTFDRSRFEAQWWQQFEDPVLNQLVSASLDGNRDLRVAFARLKAARSLREEASLDQFPVVT SRASSEIGKGQVPGQTEQRVNQERYDLGLDMAWEIDLFGRIQRQIEASRAQEDAAAADLQQLQVSLIAELVDAYGQLRGAQLRERIANDNLKTQQQSRQI TETLNEAGVGNELDVVRAEARLAGVEATLPQLQAEQVRARNRIATLLGQRPEALSVDLAPKALPAIAKALPVGDPGELLRRRADIRSAERQLAAATANIG VATADLFPRVSLSGFLGFTAARGSQLGSSAAGAWALGPSIQWAAFDLGSVRARLRGARADAEGALARYEQQVLLALEESSNAFSDYGKRQQRLLALIRQS EASRKAAQLASVRYREGSVDYLVLLDAERERLAAEDAQAQGEVALYQGIVDIYKALGGGLQPAVVASAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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