Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTCCAGCCTGCTGATAGAGCATGGACCCTGCACCTCAAGCCGAGTGCCATCGGCGCCGTTCAGCGCGTCGATGCAGCAACCGCCGCCACCGCGCAGTCTC ACGCCTGTCAGCCAAACCGAAAGGAGTTCGCCATGCCTGTCCAGATCGATGCAACCACCCATCGCTGCACCCTGATCGGCGCCGAGCGCACGCTCGAGGC CGAGGGTGCGCAGATCGAGATCATCACCGACGAGCAACTGCGCATGTCGGTCGCGCTGCTGGATGATCTGCGCGTGCCGATCACCGAGGCCGAAGCCGAT GCGCTGACCGTGGCCGGTGCGCGCGACAGCCGCAAGCACCTCAAGGCCAGCGTTCAAGGTTCGGTCATCTGAACCTGGCCAATGCCACTGATACGGTGTT ATTCGCAATTACTGAGCCTGTGCTGAAAACAGCTCGACAGCCATAGTGGCAGGCGGTTGAATCAACCGCCCCGTCCACTTGATCTGCCCGCCGAGCCGCC
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DNA Sequence for Gene |
>H618_RS0105330
ATGAAACGCTACGAACGCTTTGCCGATGACATCGCTGAACTGATCCGCAGTGGCGTGCTGGGCCCAGGACAGCGGATTCCTTCCGTGCGCTATGCCAGCC AGACCCACGGGGTCAGCCCTTCGACGGTGTTCCAGGCCTACTACCTGCTCGAGCGCCGCGGCCTGATCCGCGCCCGCGCGCGCTCCGGGTACTTCGTCAA CAGCCACGTGCCGCACACGTTCGTCGAGCCGCAGGCACTGGCGCCGGTCAGTGAGTCGACCGAAGTGGATGTCAGCGGCCTGGTGTTTTCCATTCTCGAC TCGATCAAGGACCCGTCCACCGTGCCGTTCGGCTCGGCGTTCCCAAGCCCCAGTCTGTTCCCTTTGCAGCGCCTGGCGCGCTCGCTGGCCAGTGCCACGC GCAGCATGGACCCGCAGGTGGTGGTCAGCGACCTGTCACCGGGCAACCCGCAACTGCGCCGGCAGATCGCCCTGCGCTACATGGTCGGCGGGTTGATGTT GCCCATGGAGGAACTGCTGATCACCAACGGCGCCCTGGAAGCGCTCAACCTGTGCCTGCAAGCGGTGACCGAGCCCGGTGACCTGGTAGCCATCGAAGCC CCGGCCTTCTATGCCTGCCTGCAAGTGCTCGAACGCCTCAAGCTCAAGGCCGTGGAAATTCCGGTGCAGCCGCGCCAGGGCATGGACCTGGAGGTGTTGG CGCAGACCCTCGACAAGCACCCGATCAAGGCCGTGTGGTGCATGACCAACTTCCAGAACCCGGTGGGCGCAAGCATGCCCGAGACCAGCAAGCAGGCGCT GGTCGAGCTGTTGCGCCAGCACCAGGTGCCGCTGATCGAAGACGACGTCTACGCCGAGCTGTACTACGCCCAGCAGGCGCCAAAACCGGCCAAGGCCTTC GACACCGAGGGCCTGGTGATGCACTGCGGGTCGTTCGCCAAGAGCCTGGCGCCGGGGTATCGGGTGGGCTGGGTCGCCGCCGGGCGCTACGCGCAGAAGA TCGAACGGCTCAAACTGATGACCTCGCTGTGCGCCTCGATGCCGGCCCAGGCGGCGATCGCCGACTACTTGCAGCACGGCGGTTATGACCGTCACCTGCG CAAACTGCGCTACGCCCTGGAGGGGCAGCAGGCCAACATGCTGGCCGCGATTGCCCGCTATTTCCCGGTGCAAACCCGGGTCAGCCAGCCTTCGGGCGGG TATTTTCTGTGGCTGGAGTTACCCGAGCAGGTCGATGCGCTGAAACTGTTCCAGATGGCGCTGGCCCAGGGCATCAGCATCGCGCCAGGGCCGATCTTCT CGCCGACCCAGCGCTTCGGCCACTGCATTCGCCTGAACTACGGCAGCCCCTGGACCGAGACCACGGAAAAAGCCATGGAGACCCTGGGCAAGATCATCCG TTCGTTCCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACGAGGCTGCGCTCAGCGCCCGCCGCCCACATCCAGCAGGCTGCCGGTGCAGTACGAGGCGTTGTCCGAGGCCAGCCAGAGGATCGCCTGCGCCACTTCC TCGGCCTCACCACCGCGGCCCATGGGCACGCCAGCCTGCAGTTTGCTGACCCGCTGGCCATCGCCGCTGAGCTGGTGAAAGCCGGTATTGATCAGGCCCG GGCGCACGGCATTGACCCGCACGCCCTCGCCTGCCAGCTCTTTGCTCAGGCCAATGGTGAAGGTGTCCAGCGCACCTTTGGAGGCGGCGTAGTCGACGTA CTCGCCGGGCGAGCCGAGCCGCGCCGCCAGCGACGACACATTGACGATGCTGCCGCCCTCGCCGCCATGACGCTGCGACATGCGCAACAGCGCCTGGCGA GCGCAGAGCATCGGCCCGACCACGTTGATCTTCATCATGCGCAGCAGGCGTGCTTGATCCATGCCTTCCAGGCGGCTTTGCAGGTCAGTGGTGCCGGCGT
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Amino Acid Sequence |
>GntR family transcriptional regulator
MKRYERFADDIAELIRSGVLGPGQRIPSVRYASQTHGVSPSTVFQAYYLLERRGLIRARARSGYFVNSHVPHTFVEPQALAPVSESTEVDVSGLVFSILD SIKDPSTVPFGSAFPSPSLFPLQRLARSLASATRSMDPQVVVSDLSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEA PAFYACLQVLERLKLKAVEIPVQPRQGMDLEVLAQTLDKHPIKAVWCMTNFQNPVGASMPETSKQALVELLRQHQVPLIEDDVYAELYYAQQAPKPAKAF DTEGLVMHCGSFAKSLAPGYRVGWVAAGRYAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEGQQANMLAAIARYFPVQTRVSQPSGG YFLWLELPEQVDALKLFQMALAQGISIAPGPIFSPTQRFGHCIRLNYGSPWTETTEKAMETLGKIIRSFL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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