Pseudomonas cremoricolorata DSM 17059, H618_RS0103790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCCCGCGATCCAGGCGGTTTCAAAGGCCCGGCATTGCTGCAGAACATCCTGGAAAGCGGCCTGCGCTTCGGCGACATGGATATCTTCCACCGCCACGA AAGCATGGCCGGGCATGGCGAAGTGCTGTTCTCCATGGCCAATGCGGTCAAACCGGGTATTTTCGATCTGGACGACATCGACCATTTCAGCACCCGTGCG GTGAGCTTCTTCCTCGGTCTGCCCGGTCCTCGTCATCCGAAACAGGCATTCGACGTGATGGTCGCCGCTGCCCGCAAGCTGGCCCACGAGCTGGACGGCG AGCTGAAGGACGACCAGCGCAGCGTGCTCACCGCGCAAACCATCGAGCACTACCGTCAGCGCATCGTCGAATTCGAACGCCGCGCCCTGACCCAGAAACG CTGATGCACCCACCGAGTAGATCGGCCCTCGATCTGCTCGCGATGATCGAACCTGAGAGCAGCCCCTGGCTGCTCTTTTGCTTTGCAGAGAACACCGAAG
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| DNA Sequence for Gene |
>H618_RS0103790
ATGACCGCCGAAACCCGAATTCTTGAGCTGCGCACCGAGCTGGATAAGCACAACTACAGTTACTACGTGCTTGACGAGCCGAGCGTGCCCGACGCCGAAT ACGACCGCTTGTTCAACGAGCTGAAGGCGCTCGAGGCCGAGCATCCGCATCTGGTCACTCCGGATTCGCCCACCCAGCGCGTGGGCGGCGCGGCCTTGGC GGCCTTCCAGCAGATCCGTCACGAAGTGCCCATGCTTAGCCTGGGTAACGCCTTCGAAGAAGCCGACCTGCGTGAGTTCGGTCGCCGCGTCACCGAAGGC CTCGACCTGCCCAGCGCCGACCTGCTCGGCGACGGCGCGGCGGTGGACTACAGCTGCGAGCCCAAGCTCGATGGCCTGGCGGTCAGCCTGCTGTACCGCG ACGGACAACTGGTGCAAGGCGCCACCCGCGGTGACGGCAGCACCGGCGAAGACATCAGCAGCAACGTGCGCACCATCCGCAACGTGCCGCTCAAGCTGCA CGGCAGCGGCTGGCCGCAGGTGCTGGAAGTGCGCGGCGAGGTGTTCATCAGCAAGGCCGGTTTCGAGCGCCTCAACGCCGCCCAGGCTGAGGTTGGCGGC AAGACCTTCGCCAACCCGCGCAACGCCGCTGCCGGCAGCCTGCGTCAGCTCGACTCGAAGATCACCGCCAGCCGACCGCTGGAATTCTGCTGCTACGGCG TCGGCCAGACTTCCGCGCCCATCGCCCCCAGCCATATCGACACCCTGCAGCAGCTCAAGGTCTGGGGCCTGCCGATCAGCCATGAACTCAAGCACGCCGC CGGCATCGAGGAGTGCCTGGCCTATTACCGTGACATCGGTGAGCGACGCACTGCGCTGGCCTACGAAATCGACGGCGTGGTGTTCAAGGTCAACAGCTTG GCCTCGCAGCGCGAACTGGGCTTTCGCGCCCGCGAACCGCGCTGGGCCATCGCCCACAAGTTTCCGGCGCTCGAAGAGCTCACCGAAGTGCTCGATGTGG AGTTTCAGGTGGGCCGCACCGGCGCGGTGACGCCGGTGGCGCGCCTGCGCCCGGTCAAGGTGGCTGGGGTGACGGTGTCCAACGCCACGTTGCACAACAT GGATGAAATCGCCCGCCTGGATGTGCACATCGGCGACACGGTGATCATCCGCCGTGCCGGTGACGTCATTCCGCAGGTGATGCAAGTCGTCCTCGAGCGT CGTCCGGACGACGCCCGCGCCGTGCAGATTCCCAGCCAGTGCCCGGTGTGCGGTTCGCAGGTCGAGCGCACCCAGCTGGTCAAGCGCAGCAAGGGCAGGG CGACCATCAGCGAAGGCGCGGTGTACCGCTGCGTGGGCCGGCTGAGCTGCGCGGCGCAGCTCAAGCAGGCGATCATCCACTATGTGTCGCGACGGGCCAT GGACATCGACGGCATCGGCGAGAAGAGCGTCGAGCAACTGGTCGACGAAGGGCTGATCCGCTCCCCGGCCGACCTCTACCAACTGACCTTCGACCAGATA GTGGCGCTGGAAGGCTTCGCCGAGGTGTCGAGCAACAAGCTGCTGGAGGCGATCAAGGCCAGCCAAAAGCCGACGTTGGCGCGCTTCATCTATGCCTTGG GCATTCCCGATGTCGGTGAAGAGACCGCCAAGGTGCTGGCGCGCTCGTTGGGTAGCTTGGCGCGGGTGCAGGTGGCGCTACCGCAGGTGCTCACCTACCT GCCGGACATCGGCCTGGAAGTGGCCTATGAAATTCACAACTTCTTCCAGGACCCGCACAACCAGCAGGTCATCGAACAGTTGCTCGGAAGCGGCATGCAG TTGCAGGACCAAGGCGAGCTGGCGGCCGAGTTCGCTGCCAGCACCACGCTCGCCGGGCTGATCGCCAAGCTCGACATCGCCTCAGTCGGCCCGACCGGCG CAGAAAAACTGGTGGCCAAGCTCGGCTCCCTCGACGCCATCATCGCCGCCGACGGCATCGATTTGCGCCAGGCCCTGTCAGCCAAACCCGCCGAGGCTGT ACGGGAATTCTTCAAGGACCCCGAACACCAGCAACTGGCGCGCGCCATCGAGGCCCAACTGCTGGACTTCGGCATGCACTGGAGCAGCGAGAAAAAGACC GCCGAAGGCCTGCCCCTGGCCGGGCAGACCTGGGTGCTGACCGGCAGCCTCGAGCGCATGAGCCGCGACATCGCCAAGGACCACCTCGAAGGGCTTGGCG CCAAGGTGGCAGGCTCGGTGTCGAGCAAGACCCACTGCGTGGTCGCCGGCCCCGGCGCCGGCTCCAAGCTGACCAAAGCCAATGAACTGGGCCTGAAGGT GCTCGATGAAGACGCCTTCATCACCTTCCTTGGCGAGCACGGCATCACCCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGAGTTCGAAGACAAGTCATTGAGAAATGATGGTTTTTTCTTGAGACAGAGGTTGTAACTTCGCTTCAGAGCGGTACAATGGCGCGGTTCGTCACATG GCGAACCGCGTAGTGGTGGCCCCACCGGTCCCCCCGCAATGATTACCCGTTAACCTGGTCAGATCCGGAAGGAAGCAGCCATAGCGGGAACATCGTGTGC CGGGGTGTGGCTGGTGGGGCTGCCTCCATTATGCAAGTCCTTGAATTCTCAAGGATTTCTCGCTCAAAAATCTCGAAGTGTGACAGCGTTTAGGTACATC TTAGTGGTGCGTCGTGCTGTGCATTCTAAGCTGCTAAAGCCCTCTCTCAAAGCCTTGTCATATTTAGTGGCACATTGGCATTGCTTCGTGTTCTATCGAA GGGTATAAAGAACTCGCTGGGCGTACCGTCCAGGTGCTCTTTAAACATGGTTAAATTCTCTGGGCTTGCAGTTGGTGGTTGGGAAACCGACCAGCTTTGA
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAETRILELRTELDKHNYSYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAALAAFQQIRHEVPMLSLGNAFEEADLREFGRRVTEG LDLPSADLLGDGAAVDYSCEPKLDGLAVSLLYRDGQLVQGATRGDGSTGEDISSNVRTIRNVPLKLHGSGWPQVLEVRGEVFISKAGFERLNAAQAEVGG KTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQTSAPIAPSHIDTLQQLKVWGLPISHELKHAAGIEECLAYYRDIGERRTALAYEIDGVVFKVNSL ASQRELGFRAREPRWAIAHKFPALEELTEVLDVEFQVGRTGAVTPVARLRPVKVAGVTVSNATLHNMDEIARLDVHIGDTVIIRRAGDVIPQVMQVVLER RPDDARAVQIPSQCPVCGSQVERTQLVKRSKGRATISEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMDIDGIGEKSVEQLVDEGLIRSPADLYQLTFDQI VALEGFAEVSSNKLLEAIKASQKPTLARFIYALGIPDVGEETAKVLARSLGSLARVQVALPQVLTYLPDIGLEVAYEIHNFFQDPHNQQVIEQLLGSGMQ LQDQGELAAEFAASTTLAGLIAKLDIASVGPTGAEKLVAKLGSLDAIIAADGIDLRQALSAKPAEAVREFFKDPEHQQLARAIEAQLLDFGMHWSSEKKT AEGLPLAGQTWVLTGSLERMSRDIAKDHLEGLGAKVAGSVSSKTHCVVAGPGAGSKLTKANELGLKVLDEDAFITFLGEHGITL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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