Pseudomonas cremoricolorata DSM 17059, H618_RS0101185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGACCTGCCGCTGTTCATGAGCGTGGGCGATGCGCGCAGCGACTTCAGCCTGGCCGACAGCGCGCCGGTCAGTGCCGTGCGCTGCCTGGCCGGGCCAA GCCGGCCACGCCCCAGCCATGCCCACGACAACCGCGCCTGGCGGCTGATCAGCCAGCTGTCGCTGAACTACCTGTCGCTGACTGAACAGGGCCAGGGCGC CGCCGCCCTGCGCGAGCTGCTGCGGCTGTACGGCGACAGCCACGACAGCGCCTTGCAGTTGCAGATCGACGGCCTGCGCGAGGTCAGCTGCACACCGTGC ACGCGGCGCCTGCCGATGCCCGGGCCGATCGTCTTCGGCCGCGGTCTGGAGATCACCCTGACCTTCGACGAGAACGCCTTCCGCGGCACTGGCGTGTTTC TGCTGGGCGCGGTGTTCGAGCGCTTCTTGACCCGCTACGTGTCGATCAACAGCTTCACCGAAACCGTGCTGCGCACCACCGAGCGTGGCGAGATCATGCG
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| DNA Sequence for Gene |
>H618_RS0101185
ATGGACAGCCAAACCTGGACGCAGGCCGACCCTGTGAACATCCTCGAGGCGATGCAGGCCGAGCCCTGGCAGTACGACTTCTTCCAGGCCCTGCGCCGGC TCGAAGCCGAACACCCTGAAGTGCCGCGCTTCGGCCATTCGCTGCGCCTGAGCGATGAACCGGTACGCCTCGGCCAGCGCCTGGACAGCGCCTTCGCCCC GGCCACCTTGGCCTCGGTGACGCCGGCCGATGAGCATGCTCCGGCGCGTCTGGAGCAGTTCTTCTTCGGCCTCGGCGGGCCCAACGGGCCGCTGCCGCTG CACCTCACCGAATACGCCCGCGAGCGCCAGCGCAACCACGCCGACACCACCAGCAAGCGCTTCCTCGATGTCTTCCACCATCGCCTGCTGAGCCTGTTCT ACCGGGCCTGGGCCGAAGCAAGGCCAACGGTCAGCCACGACCGCCCCGGCGACGATTACTGGGCCGGGCGCCTGGCCGCCCTCAGTGGCCGCGGCCAACC GGCCTTGCAAGGCCAGGGGCCGCTGCCCGACACCGCCAAGCTGCACTACTCCGGCCACCTCGCTGCGCAGACCCGTTACCCCGATGGCCTGTGCGGCATT CTCGCCAGTTATTTCGGCGTGCCGGTGAGCCTGGAGGAATACGTCGGGCAATGGCTCGAGCTGCCCGAACGCAGCCAGCTCGGCGTGCGTGCCAACCGCC TGGGCGTGGATATGTGTCTGGGTCGGCATGTGTGGGATCGCCAGCACAAGTTCCGCCTGCGCCTGGGCCCGCTCAGTCTCGACCAGTACCACGCACTGCT GCCCGGGGGCCAAGCCTTCAGCGAACTGGCCGCCTGGGTCGCCGAGTACCTGGGCCACGAGCTGGACTGGGAGGTGCAACTGATTCTGCGCCGCGAACAG GTGCCGGCCCTGCAACCCGGTACTGGCCGGCGCCTGGGTTTCGACACCTGGCTCGGCAGCCCCGAGCACGATGCCAGCGACCTCAAGCTGGCCCACCACT ACGCCACGCTGTCCCGCACAGCTTCCAGGAGCCCGGACCATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGCCGCGCCGCACTGTTCGGCAAACTCAACAGCCTGGCCTATCAGGCCATCGAAGCCGCCACGGTGTTCTGCAAGCTGCGCGGCAATCCCTATGTG GAACTGGCGCACTGGCTGCACCAACTGCTGCAACTGCCCGACAGCGATCTGCAGCGCATCCTGCGCCAGTTCAACGTCGAGCCGGCGCGCCTGGCGGCCG ACCTCACTGCCGCGCTGGACCGCCTGCCACGCGGCTCGACCTCGATCACCGACCTGTCTTCGCAGGTCGAGGATGCCGTGGAGCGTGGCTGGGTCTACGG CAGCCTGATGTTCGGCGCCAGTCAGGTGCGCAGCGGTTATCTGCTGGTCGGCATTCTCAAGACCCCGAGCCTGCGCAACGCGCTGCTGGGGCTGTCGGGC GAGTTCGCCAAGCTGCGCATCGAAGCCTTGAGCGAGCGCTTCGACGAGTACGTCGGTGACTCGCCGGAGAACGCCCTCGGCGCCAGCGACGGCTTCAGCG
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| Amino Acid Sequence |
>type VI secretion protein
MDSQTWTQADPVNILEAMQAEPWQYDFFQALRRLEAEHPEVPRFGHSLRLSDEPVRLGQRLDSAFAPATLASVTPADEHAPARLEQFFFGLGGPNGPLPL HLTEYARERQRNHADTTSKRFLDVFHHRLLSLFYRAWAEARPTVSHDRPGDDYWAGRLAALSGRGQPALQGQGPLPDTAKLHYSGHLAAQTRYPDGLCGI LASYFGVPVSLEEYVGQWLELPERSQLGVRANRLGVDMCLGRHVWDRQHKFRLRLGPLSLDQYHALLPGGQAFSELAAWVAEYLGHELDWEVQLILRREQ VPALQPGTGRRLGFDTWLGSPEHDASDLKLAHHYATLSRTASRSPDHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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