Pseudomonas cremoricolorata DSM 17059, H618_RS0100365
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCCGCGCCCTGCGCTCGGTGCAGACGCTGTTCGAAGAACTGACCCCACGGCTGCGCGGGGCGCTGCAACGTTGAGTGGGCCACCGGGGCCCGGCGACA AAACAGCGCTTCCCTATTGGCTGGTGATTTTTTAAACTATCGAGTCCGCCCGCCCATTCTGGGCACGCTCACCGATTTTGCTACCGAGGAACACCATGGC CCGCGTAACCGTCGAAGATTGCCTTGAACACGTGGACAACCGCTTTGAGCTGGTAATGCTGTCCACCAAACGCGCGCGTCAGCTGGCCACCGGTGGCAAA GAGCCGCGCGTGGCGTGGGAAAACGACAAACCCACCGTCGTTGCCTTGCGCGAAATCGCCGAAGGCATCATCACTGAAGAATTCCTTGCCGCCGAAGAAA TCGTCACCGAAGATCCGGTCTTCGCCGCCTTCGAGGACGAGTCCAACGAGGCCGTCTGATTGCAGCCAGGTCGACGTCGTAGGGTCTCAGAGGTGAACTC
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| DNA Sequence for Gene |
>H618_RS0100365
ATGCCGAGCATAGACGCTCTCGCCGAACGGCTGTCGACCTACCTCGGCCCCGACCAGGTCAACCTGGTGCGGCGCGCCTATTTCTACGCCGAACAGGCGC ACGACGGCCAACGCCGGCGCAGCGGCGAGCCCTACGTGACCCACCCGCTGGCGGTGGCGAACATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCCATGCTGCACGACGTCATCGAAGACACCGGTATCGCCAAGGAAGCGCTCTGCCAGCAGTTCGGCGAGACCGTCGCCGAGCTGGTCGACGGGGTC AGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCAGAGGCTCAGGCCGAGAACTTCCAGAAAATGGCCATGGCCATGGCCCGCGATATTCGCGTGATTC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCTTGGAAGTGCTGTCGGGGGAAAAGCGCCGCCGCATCGCCAAGGAAACCCTGGAAATCTACGC GCCCATCGCCAACCGGCTGGGCATGCACACCGTGCGCGTGGAATTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATCAATCGG GCGGTCAAGAGCGCACGCGGCAATCGCAAGGAAATCGTCGCCAAGATCGAGCATTCGCTGGCCAACTGCCTGGCCGCCGATGGCATCGAAGGCGACGTCA GCGGCCGGCAGAAGCACCTCTATGGCATCTACAAGAAGATGCGCGGCAAACGCCGTGCCTTCACCGAGATCATGGACGTGTACGCCTTCCGCATCGTCGT CGACAAGGTCGACACCTGCTACCGCGTGTTGGGCGCCGTGCACAACCTGTACAAGCCATTGCCCGGGCGCTTCAAGGACTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACTTTGTTCGGCATGCACGGGGTGCCCATCGAAATTCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAGTCCAATGGCGATGAACAGCCCAAAGGCAACCACGCCCGGGCCAGGCAGTGGGTCAAGGGCATTCTCGAATTGCA GCAGCGCGCCGGCAACTCGCTGGAGTTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTCTTCACCCCCAAGGGTCGCATCATGGAG CTGCCCAAAGGCTCCACCGCGGTCGATTTCGCTTATGCCGTGCACACCGACGTCGGCAACAGCTGCATCGCCTGCCGCATCAATCGCCGCCTGGCGCCGT TGTCCGAGCCACTGCAAAGCGGCTCGACGGTGGAAATTGTCAGCGCACCCGGCGCACGACCGAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATTCGTCACGCGCTCAAGCAGCAGCGCCGGTCCGAGTCGATCAACCTCGGCGAGCGCCTGCTCAACAAGGTGCTGACCGGCTTCGACAGC AGCCTCGAGCAGATCGCCGCCGAACGCATCCAGCCGATCCTCGACGAATACCGCCTGGAACTGCTCGAAGACCTGCTCGAGGACATCGGCCTGGGCAACC GCATGGCCTACGTCGTCGCCCGTCGCCTGCTCTCGGCGGAAAGCGAGCAACTGCCTGCACCTGAAGGCCCGCTGGCGATCCGCGGCACCGAGGGCCTGGT ACTGAGCTACGCCAAATGCTGCACACCGATTCCAGGCGACCCGATCGTCGGCCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTGGAAGACTGCCGG AACATCAGCGAAATTCGCCATAACCCGGAAAAGTGCCTGCAACTGTCGTGGGCCAAGGACGTCACCGGCGAATTCAATGTCGAGCTGCGGGTCGAGCTGG AACATCAACGCGGCCTGATCGCCTTGCTGGCCAGCAGCGTCAATGCCGCCGACGGCAACATCGAAAAAATCAGCATGGACGAACGCGACGGCCGTATCAG CGTGGTCCAGTTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCTCGTGTGATCAAGAAGCTGCGCACCTTGACCGGCGTGGTCCGCATCACCCGTATG CGTGCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGTCAACCGCAAGGAGTCATCATGAGCAAGACTGTCATCAACAGCGACAAGGCCCCGGCCGCCATCGGAACCTATTCCCAGGCGATCAAGGCTGGCAA CACCGTTTACATGTCAGGCCAGATTCCCCTCGATCCCAAGACCATGGAACTGGTCGAAGGCTTCGAAGCGCAGACCGTACAAGTGTTCGAGAACCTCAAG GCTGTCGCTGAAGCGGCTGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTCAGCCACTTCGCCAAGGTCAACGAGGTCATGG GCCGTTACTTCGAACAGCCCTACCCGGCCCGCGCCGCCATCGGCGTAGCTGCCCTGCCCAAGGGCGCCCAGGTCGAGATGGACGCCATCCTCGTCATCGA GTGATGCCCGCGTGACGGGCCCTGCGGCCCGTCACCTCCCCTGCATAAGGTTCCTACCATGCGTCAAGCCCTTTCCCTTGCACTGGCAGCCCTGCTCCTC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALAERLSTYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALCQQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTVRVEFEDLGFKAMHPMRSSLINR AVKSARGNRKEIVAKIEHSLANCLAADGIEGDVSGRQKHLYGIYKKMRGKRRAFTEIMDVYAFRIVVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNGDEQPKGNHARARQWVKGILELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESINLGERLLNKVLTGFDS SLEQIAAERIQPILDEYRLELLEDLLEDIGLGNRMAYVVARRLLSAESEQLPAPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLEDCR NISEIRHNPEKCLQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRTLTGVVRITRM RA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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