Pseudomonas vranovensis DSM 16006, H621_RS0126550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00014.14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCAACAACATCAAACTGGACCAGTCCGGCAGCGGCAACCAGAGCTACACCTGGCAGCTGTATGGCGACAACAACAAAGCCACCATCACCCAGACCG ATGGCGTCAATGTTGCTTTCGTGACCCAGGGTGGCTCGGGTAACCAGGCCATGGTCGATCAGAGTGGTGCGAGCATGACCGCAACCGTGCAGCAGTTCGG TACCGGCAACCAGGCGACGGTGCTGCAGCAGTAAGTGCTTCACGGGGCAGGCCCGTTCCCACATTGCCCCGCCATGGACAACCGCGCGTTTTCCCGCTTG GCCGCTACCACCGATGGGGGTGATAGCGGTCCTTTTTCTTTGCGCTCCCGCCACAACTCGCAGACCAGAGCCTCGCCTTAATATTTTATTTTTTTCCTGA CACCTTTACTTGCGAATGATAATCCATATCATTCTCGACCTTCCGAGAGCCCTGGCCTTTTGCCAGCCCCGCTCACCTTAGGTACCAGGAGAGATCTGAC
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| DNA Sequence for Gene |
>H621_RS0126550
ATGGCGTCGCGCTTCACATTCTGCCCCTTGAGTCTTGCCGTGCTGGCAACACTGGGCACTACTTCCCTTACCGCTGCTCCCCTGCCCCTGGATCACGGCG AAGTCCAGGTCCAGCCCACCGACCTGCCGGTCGCTGGCAGCCGCCAGGCCATTGAATTGGAGAACACCCGGGTACTGGGCACGGCCGAGGAGGAACTCAA GCAAGCACCCGGGGTGTCGATCATCACGGCCGAAGACATCAAGAAGCGCCCGCCGGTCAACGACCTGTCCGACATCATTCGCCGCGAACCAGGGGTGAAC CTCACCGGCAACAGCAGCAGCGGCGCCCGCGGCAACAACCGCCAGATCGACCTGCGCGGCATGGGGCCGGAAAACACCCTGGTCCTGATCGATGGCAAAC CCTCCACCTCGCGCAATGCCGTGCGCTATGGCTGGAGTGGCGACCGCGACACCCGCGGCGAAACCAACTGGGTACCGGCCGAAGAAGTCGAGCGCATCGA GATCCTGCGCGGCCCGGCGGCGGCGCGCTACGGCTCCGGCGCCATGGGCGGCGTGGTGAACATCATCACCAAGCGCCCGACCCAGGATTATCGTGGTTCG ATGACCGTCTACAGCGTGTTCCCCGAAGACGACGCCGAAGGCATGGGCAAGCGGGCCAACTTCAGCCTCAGCGGACCGATCACCGACGACGTGATCTTTC GCGTCTACGGCAGCCTGAACAAGACCGACGCCGACGACATGAAGATCAACAGCGACCACCAGGCCTTCGAGGAGTCGTTGATGGCCGGCCGCGAAGGCGT GCGCAACAAGGACGTCAATGGTCTGGTGAGCTGGAAGATCGACCCGTCCAACACTGTCGACCTCGAGTCCAGCTACAGCCGCCAGGGCAACATCTTTGCC GGCGACACCATGCTCAACGCCGGTGGCGAGTTCGTCGAAAGCCAGGTGGGCAAGGAAACCAACGTGATGCAGCGTTCAAGTTTCGCCGGCACCCATCGCG GTGACTATGACTGGGGCACCAGCACCGCATCGCTCTCCTATGACCTGACCCGCAACGAACGACTCAACGAAGGCCTGGCCGGATGGGGCGAAGGCGCCCC CTCTGACGGCGCCGGTCGCTTCGAGTCGCGCCTTCGCAACACTCGCGCCACTGGCGAGGTCAACCTGCCGCTGAGCGCAGGGTTCGAACAAGTCCTGACC CTGGGTGGCGAATACCTCTACGAGTCGCTCAACGATCCAGGCTCCCTGCGCCCGCAAAGTTATGACCCAGGCAGCGAGCTGTCGGGCTTTGACCGCACCC AGACCAAGAGCACCGCACACAGCTACGCCCTGTACACCGAAGACAACATTGAGGTCGGCAGCAGCACCATCGTTACGCCCGGGTTGCGCTACGATCACCA CGAAGACTTTGGCGGTAACTGGAGCCCGAGCCTGAACGCCTCGCACCAGATCACCGAGGCGCTGAGCATCAAGGGCGGTATCGCGCGCGCCTACAAGACC CCGAACATGTACCAGTCCAACCCCAACTACCTGCTCTACAGCCGTGGCGGCGGCTGCAACTCCAGCGAACTCAACAACGGTGGCTGCTACTTGTTGGGCA ACGCCGACCTGGACCCGGAAACCAGCGTCAACAAAGAACTGGGCCTGGCCTACGACAAAGGTACCTGGCGCACCAGTGCGACCTACTTCCGCAACGACTA CAAGAACAAGATCGAGGCCGGCAACCAGACGTTGTTCCGGCTGCCCAACGGGCGCCGCATCCTGCGCTGGGAAAACACCGACAAGGCGGTGGTAGAGGGT GTGGAAGGCAACCTGTTCATCGCCCTGAGCCCAAGCCTGGATTGGAACACCAACTTCACCTACATGATCGAGTCCGAAGACAAGAAGACCGGTGAACCGC TGAGCATCATTCCCGAGTACACCGTCAACACCACGCTCGACTGGAATGCCACCGAAAAGCTCTCGTTCCAGCTCAACGGCACCTATTACGGCAAGCAAGA GCCGCCCAGCTACAACGCCCGCGCCAACGAGGCCCTGGACAAGCGCGTACAGAAAGAAGTCGACCCCTATGGCCTGGTGGGGATCAGCAGTGGCTATGAA TTCAACAAGCACCTGAGCGTGCGGGTGGGCGTGAACAACCTGTTCGACAAGCGCCTGTATCGCGAAGGCAACTCCGATGAGGCTGGCGCACTGACGTACA ACGAACCTGGTCGCGCTTACTACGCCTCTTTTACCACCTCATTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCCTACACCAGGCCGGCGCTAAAACGTCGGCCTGCACCCCTAGATTTATCGTTTTAGCATCAATAGTTTGTAGGAATACTCTCAGTTTTCGCCCGTTT TAATCCACGCCAGCACACTTCCTATACTATCGCTCCTTGATTCGACATATCGTGAGTGCCCTTCCGGCTATAACCAGATTTTCCTTCCTGAACGACTCGG GAATTAGCCCCACAGACCCGATTATGGAGTTGCACAATGACCTCGGTGTTGATTGTTGAGGATCATGCGATAGTTCGCTATGCGTTGATTACCTTGCTCG AACGCGATCGCCATCAGATCGTCGGTGAAACCGCCGATGGCTCCAACGCCGTAGCGTTGGCGCGCAAGCATTGCCCAGAAGTAGTGATACTTGACCTTGG CCTGAAAAAAATGGACGGCCTGAGCGTGCTCAGAAGTTTACGCACCCTCGCCCCGCCACCCCGGGTGCTGGTGCTCACCGCCCAGCCCCCTGACCTGTTT
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| Amino Acid Sequence |
>outer membrane receptor protein
MASRFTFCPLSLAVLATLGTTSLTAAPLPLDHGEVQVQPTDLPVAGSRQAIELENTRVLGTAEEELKQAPGVSIITAEDIKKRPPVNDLSDIIRREPGVN LTGNSSSGARGNNRQIDLRGMGPENTLVLIDGKPSTSRNAVRYGWSGDRDTRGETNWVPAEEVERIEILRGPAAARYGSGAMGGVVNIITKRPTQDYRGS MTVYSVFPEDDAEGMGKRANFSLSGPITDDVIFRVYGSLNKTDADDMKINSDHQAFEESLMAGREGVRNKDVNGLVSWKIDPSNTVDLESSYSRQGNIFA GDTMLNAGGEFVESQVGKETNVMQRSSFAGTHRGDYDWGTSTASLSYDLTRNERLNEGLAGWGEGAPSDGAGRFESRLRNTRATGEVNLPLSAGFEQVLT LGGEYLYESLNDPGSLRPQSYDPGSELSGFDRTQTKSTAHSYALYTEDNIEVGSSTIVTPGLRYDHHEDFGGNWSPSLNASHQITEALSIKGGIARAYKT PNMYQSNPNYLLYSRGGGCNSSELNNGGCYLLGNADLDPETSVNKELGLAYDKGTWRTSATYFRNDYKNKIEAGNQTLFRLPNGRRILRWENTDKAVVEG VEGNLFIALSPSLDWNTNFTYMIESEDKKTGEPLSIIPEYTVNTTLDWNATEKLSFQLNGTYYGKQEPPSYNARANEALDKRVQKEVDPYGLVGISSGYE FNKHLSVRVGVNNLFDKRLYREGNSDEAGALTYNEPGRAYYASFTTSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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