Pseudomonas vranovensis DSM 16006, H621_RS0125730
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00011.11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAGATGAACTTCGTCGACAACCAGGTCAACCCCAAGACCGGCACCATCCGGGGCCGCGCGGTGTTCGACAACAGCAACGGCGAGTTCACCCCCGGCCT GTATGCGCGCCTCAAGCTGGTGGGCAGCGCCACCTACTCGGCGGTGTTGATCAACGACGAAGCCGTGGGCACCGACCTTGGCAAGAAGTTCGTGCTGGTG ATGGACAAAGACAACAACGCCGCCTATCGCGCCGTCGAATTGGGTCCCAAGCTCGAGGGCCTGCGTATCGTGCGCAGCGGCCTGAGCAAAGAGGACCGCA TCGTGGTCAAGGGCCTGCAGCGTGTACGCCCAGGCTCACCAGTCGACCCGCAGGACACCCCGATGGCCAGCGAAGCGACCATCGCCGCCCTCGCCCAGCA ACGCCAGGCGCTGGAAGCCAGCAACCCGGGCAAACCTGCTGCCCCTGCCACCGTCAAGCTCGCCAGTGCCTCGGCACCGCGCGGTTAAGGAATCGGTCCG
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| DNA Sequence for Gene |
>H621_RS0125730
ATGAATTTTTCCACGTTCTTTATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGCTGATTCTGATTGCCGGCAGCATCTCGCTGTTCCAGCTGCCGA TCAGCGAATACCCGGAAGTGGTACCGCCCACCGTTGTCGTGCGGGCCAACTTCCCCGGTGCCAACCCGAAGGTGATCGGCGAAACCGTCGCAGCGCCGTT GGAGCAGGCCATCACCGGCGTTGAGAACATGTTGTACATGTCCTCGCAGTCCACCGCTGACGGCAAGCTGACCCTGACCATCACCTTCGCCCTGGGCACC GACCTGGACAACGCCCAGGTGCAGGTGCAGAACCGCGTGACCCGAACCCAGCCCAAGCTGCCCGAGGAAGTCACCCGTATCGGTATCACCGTCGACAAGG CCTCGCCCGACCTGACCATGGTCGTGCACCTGACCTCGCCCGATAACCGCTACGACATGCTCTACCTGTCCAACTACGCCATTCTCAATATCAAGGACGA ACTGGCACGCCTGGGCGGTGTCGGCGATGTGCAACTGTTCGGCATGGGCGATTACTCCCTGCGGGTATGGCTGGACCCGAACAAGACCGCTTCGCGCAAC CTCACTGCCAGCGACGTGGTCGCCGCCATCCGCGAGCAGAACCGCCAAGTGGCCGCCGGCCAGCTCGGCGCCCCACCCGCGCCCGGCAGCACCAGCTTCC AGTTGTCGGTGAACACTCAGGGCCGCCTGGTCAGTGAAGAAGAATTCGAGAACATCATCATCCGCTCCGGCGCCGATGGCGAAATTACCCGCCTCAAGGA CATCGCCCGGGTCGAATTGGGATCGAGCCAGTACGCCCTGCGCTCCTTGCTCAACAACCAGCCGGCCGTGGCCATCCCGATCTTCCAGCGCCCGGGCTCC AATGCCATCGAGATCTCCGATGAAGTGCGCTCGAAAATGGCCGAGCTGAAGAAGGACTTCCCCGAAGGCATGGACTACAGCATCGTCTATGACCCGACCG TGTTCGTGCGCGGCTCCATCGAGGCGGTGGTCCACACCCTGTTCGAAGCCCTGGTGCTGGTAGTACTGGTAGTGATCCTGTTTCTGCAGACCTGGCGCGC CTCGATCATTCCGCTGGTGGCTGTACCGGTTTCGCTGATCGGTACCTTCGCGGTAATGCACCTGTTCGGTTTCTCTCTCAACGCCCTGTCGCTGTTCGGC CTGGTGCTGGCCATCGGCATCGTGGTGGACGACGCCATCGTGGTAGTGGAAAACGTCGAGCGTAATATCGGCCTGGGGCTAAAACCCCTGGAAGCCACGC AAAAGGCCATGGGCGAAGTGACCGGGCCGATCATCGCCACGGCCCTGGTGCTGTGCGCCGTGTTCGTGCCGGCAGCCTTCATTTCCGGCCTTACCGGGCA GTTCTACAAGCAGTTCGCCCTGACCATCGCCATTTCGACGGTGATCTCGGCCTTCAACTCGCTGACCCTGTCGCCTGCGCTAGCAGCGGTACTGCTCAAG GAACACCACGCGCCCAAGGACCGTTTCTCCCGGATGCTGGAGCGCCTGTTCGGTGGCTGGTTGTTCGGCCCGTTCAACCGCTTCTTCGACCGTGCCAGCC ACAGCTATGTCGGCGCCGTCGGCCGGGTCATCCGCAGCAGCGGCATCGCCCTGTTCGTGTACGGCGGCCTGATCGTCATGACCTGGCTGGGCTTCTCTTC GACGCCGACCGGTTTCGTGCCGGCGCAAGACAAGCAGTACCTGGTGGCCTTCGCCCAGTTGCCGGACGCGGCCAGCCTCGACCGCACCGAGGCGGTGATC AAGAAGATGAGCGAGGCTGCCCTGAAGCAACCCGGTGTCGCCGACTCCATCGCATTCCCGGGGCTCTCGATCAATGGGTTCACCAACAGCCCCAACAGCG GCATCGTATTCGTCTCGCTCAAGTCGTTCGACCAGCGCAAGGACCCCAGCCAGTCGGCTGCGGCGATTGCCGCCACACTGAACGCGCAGTACGCCGATAT CCAGGAAGCCTATATTGCTATCTTCCCGCCGCCACCCGTACAAGGGCTGGGCACAATCGGTGGTTTCCGCCTGCAGATCGAGGACCGTGGCAACCTGGGT TACGAAGCGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCAAAACGTGCCGGAGCTGGCCGGGTTGTTCACCAGCTACCAGGTCAACGTGCCGC AGGTCGATGCCGCCATCGACCGGGAAAAGGCCAAGACCCATGGTGTGGCCATCAGCGATATCTTCGACACCCTGCAGATCTACCTGGGTTCGCTGTACGC CAACGACTTCAACCGTTTTGGCCGCACCTACCAGGTCAACGTCCAAGCCGAACAGCAGTTCCGTCTCGACGCCGAGCAGATCGGCCAGTTGAAGGTGCGC AACAACCAGGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGATACCTCCGGGCCTGACCGCGTGATGCACTACAACGGCTTTATTACCGCCG AGATCAACGGCGCCGCAGCCCCGGGCTACAGCTCCGGCCAGGCGGAACAGGCCATCGAGAAACTGCTCAAGGAAGAATTGCCCAACGGCATGACCTTTGA ATGGACCGAACTGACCTACCAGCAGATCCTGGCCGGCAACACCGCGCTGTTCGTGTTCCCGCTCTGCGTACTACTGGCCTTCCTGGTGCTGGCGGCCCAG TACGAAAGCTGGAGCCTGCCACTGGCAGTGATCCTGATTGTGCCGATGACCCTGCTCTCGGCGATCACTGGGGTGATCCTGTCGGGCGGTGACAACAACA TCTTCACCCAGATCGGCCTGATCGTACTGGTGGGGCTGGCGTGCAAGAACGCCATCCTGATCGTCGAGTTTGCCAAGGACAAGCAGGCCGAAGGCCTCGA CCCGCTGGCTGCGGTGCTGGAAGCCTGCCGCCTGCGCCTGCGGCCGATCCTGATGACCTCGATTGCCTTCATCATGGGTGTGGTACCGCTGGTGTTCTCC TCCGGTGCCGGTGCCGAAATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGATCGGGGTGACCTTCTTCGGCCTGCTGCTGACGCCTGTGTTCT TTGTACTGATCCGCCGTTATGTCGAACGCAGCCAGGCCCGCAAGGCGGCCCGTGTGCTGAAGCTGGAGAGCCACGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCACCTGAAATTGATGGCACCCAGCCTACTGGTGCTGGCGCTGGCGGCCTGCGCCGTCGGCCCGGACTACAAGACCCCGGACACCGCGGCGGCGCAATT GACCGCTGCCAACGAGCCAAGCGCCAAAACCGCTTTCGACCGCAGCCGCTTTGAAAGCATCTGGTGGAAGCAGTTTGACGACCCGGTGCTCAACCAACTG GTCAGCCAGTCGCTGCAGGGCAACCGGGAACTGCGCGTGGCCTTTGCCCGCCTCAAGGCCGCCCGGGCGATTCGCGACGATGTCAGCAATGACGCCTTGC CCACCGTCACCAGCCGGGCCAGCAGTGAGCTGGGCAAGGGGCAGATTCCGGGCCAGACCGAGGATCGGGTCAATAGCGAGCGCTATGACCTGGGCCTGGA CATGGCCTGGGAGCTTGACCTGTTCGGCCGCATCCAGCGCCAGCTGGAGGCCAGTGAGGCCCAGCAGGACGCCGCCCAGGCCGACTTGCAACAACTGCAG
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| Amino Acid Sequence |
>transporter
MNFSTFFITRPIFAAVLSLLILIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGT DLDNAQVQVQNRVTRTQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSVNTQGRLVSEEEFENIIIRSGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIEISDEVRSKMAELKKDFPEGMDYSIVYDPTVFVRGSIEAVVHTLFEALVLVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK EHHAPKDRFSRMLERLFGGWLFGPFNRFFDRASHSYVGAVGRVIRSSGIALFVYGGLIVMTWLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEAVI KKMSEAALKQPGVADSIAFPGLSINGFTNSPNSGIVFVSLKSFDQRKDPSQSAAAIAATLNAQYADIQEAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLG YEALYKETQNIIAKSQNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAISDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLDAEQIGQLKVR NNQGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEQAIEKLLKEELPNGMTFEWTELTYQQILAGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQAEGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFFVLIRRYVERSQARKAARVLKLESHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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