Pseudomonas vranovensis DSM 16006, H621_RS0116280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00015.15_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACGCCACCATCGAGGGCAACCTCGAACCGCTGGAGATCGGCAAGGGTGTAGTGCGCCGCCAGGGCAGCAAGGTTGCCTTGCTGGTCTTCGGTGTACAA CTGGCAGAGGCACTGAAAGTGGCCGATGGCCTGGACGCCACCGTGGTCGACATGCGCTTCGTCAAACCATTGGATGAAGCCCTGGTTCGCGAAATCACCG CCGGCCATGAGCTGCTGGTGACTATTGAAGAGAACGCCATCATGGGCGGCGCTGGCGCTGCAGTCAGCGAGTTCCTTGCCCGCGAAGCCGTGCTCAAGCC AATGCTGCACCTGGGCCTGCCGGACGTTTATGTCGAACATGCAAAGCCTGCACAAATGCTGGCCGAGTGCGGGCTGGACGTTGCCGGTATCGATGCCTCG GTGCGCGAGCGTATGCAACTGCTGGGTCTTTGAGAACTGATCGCGGGGCAAGCCCGCTCCTACAGGAGCGGGCTTGCCCCGCGATCGTTTTGGAACTGCC
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| DNA Sequence for Gene |
>H621_RS0116280
ATGAAGCTTCTTCGCCTCACCCTCCTGCTGTGCCTGCCCACCCCCCTGCTGGCCGAGCCGGTCGACCGCGACAGCGCCCTGAAACTGCCCAACACCCTGA TCAGCGCCAACCGCCAGGTCGAGGACCGCACGCAAACCAGTGCCGCCAATACCGTCTTCACCCGTGACGACATCGACCGCCTGCAGCCCACCAGCGTCAC CGACCTGCTGACACGGGTACCCGGAGTTCAGGTGGCACCAACGGGCGGTCGCGGCAGCGTGCCGGGCATCTACATCCGTGGCAGCAAGACCGCGCAAAGC CTGGTGCTGGTAGACGGCGTACGCATTGCCAACGCCACCTCCGGTGACAGCGGCCTGCAGTTTCTCAACATCGACCAGGTCGAGCGGGTCGAAGTACTGC GTGGTTCTCGCTCGGCAGTCTATGGCAGCGATGCGATTGGCGGGGTCATTCAGATCTTCACCCGTCGCAGCGCCCTGCAAGGACTGCAACCTCGCCTGCG CCTGGCCGCCGGCAGCAATCAGAGCTGGGAGCACAGTCTGGGACTTTCCGGTGGCGATCAGAACACCCGTTTCAACCTCGGTGCCAGCCTTGATGAAAGC GCCGGTATCGACTGGAGCCACACCTCCTATCCCAGCGATGGCGACCATGACGCCTACCGTAACAAGTCGTTCAACCTGAGCCTGAGCCACAGCTTCAACG ACAACGTCGAGGCCGGCCTGAACCTGCTCGACAGCCGTGGCCGCAGCGAATACGACAACCCGTATGGCCGCTTCGACGTGGGCACCTTGCAGAGCTTCGG CCAGGCCCCCTATACCGACTACATCGTCAGCAGCCTGGGCACCTACCTCGGCGCCCAGCTCAACGAGCGCTGGTACTCGCGCCTGGAACTGGGCCACAGC GAGAACCGCGATAAAAAGCGCGACAAACTCAGCAGCGACGCCAGCGAGTTCAACACCTACCGCGACTCCGCAAGCTGGCAGAACGACCTGACGCTCGATG AGCAGAACAACCTGATGGTCGGTGCCGACTGGTACCAGGACCGAGTACACGGCAGCACCGATTTTGACGAAGACAGCCGCTGGAACCGGGCAGCCTTCGT CCAGCATCGTTTCAAGGGCGAGTGGTTTTCCACGGAACTGGGGTTACGCCGCGACCAGAACCAGCAGTTCGGTGGGCAAAACACCTGGAGCGGCAGCCTG ACCCTGCCGCTCAACCCCGACAACGACCTGCTGGTTTCGTACAGCGAAGGTTTCCGCGCCCCGACCTTCAACGATCTGTACTACCCCCAGTACAGCAATC CGGACCTCAAGCCCGAACGCTCGAAAAGCTACGAGTTGCAGTGGCGCAGCCAGCTGACCGAAGAGAGCCGCCTGGAAACCTCGATCTACCGCACCGACCT GCGCGACGCGATCATCTTCGGTGCCGACTCGATCCCGCGCAACGTGGCTTCGGCCCGGGTCAATGGCTTTGAAGCGGCTCTGCATCAAACCTGGTTCGGC TGGCAGAGCAACCTGGGCCTGGCGCTGATCGATCCCCGTGACCGCGACAACGGCCACACCCTGGCCCGCCGCGCCCGCCGCACCTTGAGCCTGGATCTGG ACCGCCAGTTTGACCAGCTCGGCCTGGGCGCCAGTTGGCAAGCGGTGAGCAGCAGCTTTGACGACGAAGCCAACCGCAACAGAATCGGCGGCTATGCCCT GCTCGGCCTGCGCAGCAGTTGGACACTCAACCCGGAGGTCAAGCTGGAGCTCAAGGTCGACAACCTGATGGACAAGGCGTACTCGCGGGCCCTGTATACC TATGAGGGCACGCAATATGGCTACCGCGAAGAAGGCCGTACCTGGCTGATTGGCGTTACCTGGACGCCGGGGCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTCGATCAACCGACACAAACGCGCGGTTGCTTCGATCATTTGCCCGCTGGGTCGCTCCAGGCCCTTGTCCGGCACTTGCAGCAAGCGTCCGTTGCGCAC CGCTTCGACCTGCGGCCAGGCCTTCCAGGCGTCGAGCTGGGCCTGGTCAGGCGCCAGGATCACCTGGGGATTTTGCAACAGCACGGACTCCAGACTGACC TGTGGTGCTGGCAGCTTGAGCTCGGCGAACACATTGCGCGCGCCGCACACACCCAGCGCATCGCTGACGATTTGACCACCACCGACGGTGTACAACGGTT TGTCCCAGACCTGATAGAACACCCGCAATGGCTGTTCGCGGTGATAGCGCGCACGCAGTGCCTGCAGTTGCTGGCGCAGTTGCTGGGCACGCATTCGGCC TTGCTCCGCCCGCCCCAGGTGCACGCCTATCTGCTCGATCTGCTCGATCAACTCATCGATGTCATGGGGCGCGGCACTGTAGGTGGCAATGCCAAGGCGT
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| Amino Acid Sequence |
>TonB-dependent receptor
MKLLRLTLLLCLPTPLLAEPVDRDSALKLPNTLISANRQVEDRTQTSAANTVFTRDDIDRLQPTSVTDLLTRVPGVQVAPTGGRGSVPGIYIRGSKTAQS LVLVDGVRIANATSGDSGLQFLNIDQVERVEVLRGSRSAVYGSDAIGGVIQIFTRRSALQGLQPRLRLAAGSNQSWEHSLGLSGGDQNTRFNLGASLDES AGIDWSHTSYPSDGDHDAYRNKSFNLSLSHSFNDNVEAGLNLLDSRGRSEYDNPYGRFDVGTLQSFGQAPYTDYIVSSLGTYLGAQLNERWYSRLELGHS ENRDKKRDKLSSDASEFNTYRDSASWQNDLTLDEQNNLMVGADWYQDRVHGSTDFDEDSRWNRAAFVQHRFKGEWFSTELGLRRDQNQQFGGQNTWSGSL TLPLNPDNDLLVSYSEGFRAPTFNDLYYPQYSNPDLKPERSKSYELQWRSQLTEESRLETSIYRTDLRDAIIFGADSIPRNVASARVNGFEAALHQTWFG WQSNLGLALIDPRDRDNGHTLARRARRTLSLDLDRQFDQLGLGASWQAVSSSFDDEANRNRIGGYALLGLRSSWTLNPEVKLELKVDNLMDKAYSRALYT YEGTQYGYREEGRTWLIGVTWTPGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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