Pseudomonas vranovensis DSM 16006, H621_RS0116190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00015.15_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACAAATCCCAGTTGCTTGATTTCATTCTGAACGAGGAGGCCGGTGGCCAGGTTGTCAGCCTGGAGCCTTTGGCGCGACAGGCACTGCTGGCGTTCGCCTG GCCTGGTAACGTGCGGCAATTGCGTAATGTGCTGCGTACATTGGTGGCGCTGTGTGATGACGGCGTTATCCGCCATGCCGACCTGCCACCCACGGTAGGA GCGACGGTGCGAGGTCTCGACGTGTCCCGCGATAACGGTATTTCCGAAACGACTCATCGCGGGGCAAGCCGAGGTGCTGCACCGCCGCTGCTACAGTGCG CCGAGCGTGATGCATTGCTTGCCACCCTTGAACAGCAACGCTGGCACATGACCCATGTCGCCGCGCAGTTGGGTGTCAGCCGCAATACCTTGTATCGAAA ACTTCGCAAGCACGGTATCGCCCGCAGTCTTTGAGCGAAACACAGGATGCGATTTCCTGTGCGCTGGGCTACCCTGCCTCGACGTTTTGCGAGGTCGATC
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| DNA Sequence for Gene |
>H621_RS0116190
ATGCACATTCATATTCTTGGTATTTGCGGCACTTTCATGGGTTCGCTGGCGGTGCTGGCCAAAGAGCTCGGTCATCGCGTCACCGGCTCCGACGCCAATG TCTATCCCCCCATGAGCACCCAGCTTCAGGCCCAGGGCATCGAGTTGACCCAGGGCTATGACGCCGCCCAACTGGACCCGGCGCCAGATCTGGTGGTGAT CGGCAATGCGCTGTCGCGCGGCAACCCTGCCGTGGAGTACGTGCTCAACAAGGGCCTGCCGTATGTGTCGGGCCCGCAGTGGCTGGCCGACCATGTGCTG CAAGGTCGTTGGGTGCTGGCGGTGGCGGGTACCCACGGCAAGACCACTACCAGCAGCATGCTGGCCTGGGTGCTGGAACATGCCGGTATGAGCCCGGGCT TCCTGATTGGCGGTGTGCCACAGAACTTCTCGGTGTCGGCGCGCTTGGGCGGCACACCGTTCTTCGTGGTCGAGGCCGACGAATACGACAGTGCCTTCTT CGACAAGCGTTCGAAATTTGTCCACTATCGCCCGCGTACCGCGATCCTCAACAACCTTGAGTTCGATCACGCGGATATCTTCCCTGATCTGGCAGCGATC GAGCGGCAATTCCATCACTTGGTACGTACCATTCCGAGTGAAGGGCTGGTCATTCATCCAACCACCGAGCTTGCGATCGAGCGGGTGATCAAGATGGGTT GCTGGACACCGGTGCAAACCACCGGTGAAGGCGGGCAGTGGCAAGTCAAGTTGCTCAGTGCCGACGGTTCACGTTTTGAAGTCAGCTTCGAGGGCGAGGT TCAAGGTGTAGTCGAGTGGGAACTGACCGGCCAGCACAACGTTGCCAACGCCCTGGCGACCCTGGCCGCGGCTCGCCATGTGGGTGTGGTGCCGGCGATG GGTATTGCCGCTTTGAGTGCTTTCAAGAGCGTCAAGCGTCGCATGGAGAAAGTCGCCGAAGTGCAGGGCGTGACCATCTATGACGACTTCGCGCACCATC CGACGGCCATTGCCACCACCCTCGACGGCCTGCGCAAGCGCATTGGCGATGCACCGTTGATCGCGGTGATCGAGCCTCGCTCCAACTCGATGAAGCTGGG CGCGCACCGCGATGGTCTGCCGGAAAGCGTCAACGATGCCGATCAGGTCATCTGGTATGCACCGCCCAACCTGGGCTGGGACCTTGCCGCCACTGCCGCC GAGTGTAAGGTGCCTGCCGTGGTTGCCGACAGCCTTGAAGCGATCATCGAGCGGGTCAAGAGCCAGGCCAAGCCCGGCACCCAGGTGGTGATCATGAGCA ACGGCGGTTTTGGTGGGCTGCACGGCAAGCTGGCCGAGGCGCTGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGCCGGAACGCATCACCCTGGCCATGACCGGGGCTTCGGGGGCGCAGTACGGACTGCGCCTGCTCGACTGCCTGGTGCGCGAAGACCGGGAGGTGCA CTTTCTGATCTCCAAGGCCGCGCAACTGGTGATGTCGACCGAGACCGACGTGGTGCTGCCGGCCAAGCCTCAGGCGATTCAAACCTTTCTCACCGAGTAC ACCGGCGCTGCCGCCGGGCAGATTCGTGTGTACGGCAAGGAAGACTGGATGTCGCCAGTGGCCTCCGGTTCCGGTGCCCCCGCAGCGATGGTGGTGGTGC CGTGCTCTACCGGCACCCTGTCGGCGATTGCCGCGGGCGCCTGCAACAACCTCATCGAGCGGGCTGCCGACGTCACCCTCAAGGAGCGTCGGCAGTTGAT CCTTGTGCCGCGTGAAGCACCGTTCTCCACCATTCACCTGGAGAACATGCTCAAGCTGTCGAACATGGGGGCGGTGATCCTGCCTGCGGCGCCGGGGTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLQAQGIELTQGYDAAQLDPAPDLVVIGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTIPSEGLVIHPTTELAIERVIKMGCWTPVQTTGEGGQWQVKLLSADGSRFEVSFEGEVQGVVEWELTGQHNVANALATLAAARHVGVVPAM GIAALSAFKSVKRRMEKVAEVQGVTIYDDFAHHPTAIATTLDGLRKRIGDAPLIAVIEPRSNSMKLGAHRDGLPESVNDADQVIWYAPPNLGWDLAATAA ECKVPAVVADSLEAIIERVKSQAKPGTQVVIMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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