Pseudomonas vranovensis DSM 16006, H621_RS0114900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTGGGGCTACCGGCAGGTATTGAACCGACCATCAAGGCCCTTGGCCAGGCCGCTCTGCCCTTGGGCCTGCTATGTGTTGGCGCCGCATTGGGCAGCAG TGCCCAAGGTTTGGGCAGACGGCCGTTGCTGGCGGCGTCGCTGTTCAAGTTCGTGGTGCTGCCTTTGACCACATTTGGTATATGCCGGGCACTGGGCCTG AGCGGCCAGGCGGCGATCATCGCCATCCTGTTCCAGGCACTGCCCACCGCATCATCTTCCTATGTGATGGCTCGGCAAATGGGCGGTAACGCACCGCTGA TGGCCAACATCATTGCCTTGCAGACCCTGCTGGCTGCCTTGACCTTGCCGGTGATGCTGAGCCTGACGCTGGTGTGAAGTGGAAGGTAATTTTTTGTATC TGAATGATAACGCTTTGCAAATACACCTGTTAACATTTGCGATTACTAATTACTCGCAACGCCAGGAAGGCGCCAACTCGACATTAACAGGGCCTCCGCC
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| DNA Sequence for Gene |
>H621_RS0114900
ATGGCTTTACGCTCCCCCTTTCGCCCCACCCTGCTTGCCGTTTGCTGTGCTGCCAGCGTAACCGCGCACGGCGCCGACGCCGTTCTGGAGCTCGACGCTA CCGCTGTCAATGCCCAGGCCACCAAGCCCCTGCGCAATGCGCCAGTCGAGGAATATGCCGGCGGCCAGGTTGCCCGTGGCGGGCAGATGGGCGTATTGGG GAACCAGGACAATATGGATGTCCCCTTCACCATGACCAGCTATACCTCGAAACTGATCGAGGACCAGCAGGCCGAAGACGTGGGCGATGTTTTGCTCAAC GACCCGTCAGTGCGCCAGTCTGTCGGCTTCGGCAACCAGTCGCAGGTCTTCGTGATTCGCGGCTTGCCCCTGAGTGGCGATGATATTTCCTACAACGGCC TGTATGGCGTATTGCCGCGCCAGATCATCTCCACCGATGGGGTGGATCGGGTCGAGGTGTTCAAGGGGCCCAACGCCTTCATCAATGGTGTCAGCCCTAC CGGCGGCGGCCTGGGCGGCAGCGTCAACCTGCAACCCAAACGTGCCGGCGACACGCCAACCCGCCGCTACACCCAGGACATTTCCACCGATGGCCGCATC GGCGAGCATCTGGATATCGGCCAGCGCTTCGGTGCCGACAACCGTTTCGGTGCACGCCTGAACCTCTCCCAACGTGAGGGCGAAACAGCGGTCGAAGATC AGGATCAGCGCAGCAAGCTGTTTGTCGCAGGCCTGGACTACCAGGGTGATCGCTTCAGTGTGTCCACCGATTTCGGCTACCAGAAAGAACGCGTCAACCA CCTGCGCAACTCGGTGCAGCTCGGCGCCGGCCTCACCGATATTCCCCGCGCCCCCGATGCCAGCCACAACTACGGGCAGGACTGGACCTTCACCGAGACC GAAGACACCTTCGGCATGGTGCGCGGCGACTGGGACTTGAACGACAACTGGAGCGCTTACCTGGCCGGTGGCGTCAAGCACACCCGCGAGACCGGGTTCT ACGGCACCCCGACCCTGACCAATGCCGCCACGGGTGCGGCGACCATGGGCGGCTCGTTCATTCCACACAACGAAGACAACACTACATTCATGGGCGGCCT CAACGGCAAGCTGCAAACCGGGCCGGTCAGCCACCAGTTGAACCTGGGCGCTTCGACCATCTGGACCCAGCAGGAAAACGCCTACGTGTTCTACCGTGGC CAACCGACCAACATCTACAACACCACCCCGCTGCCCAAGCCGACCGCTGTGACCATCACCGGCGGCGAATTGGGTGATCCGGGTGTCACCGGTAAGACCC GCAACCGCAGCATTGCCTTCTCCGACACTCTGGGCTTTTTCGACGACACCCTGCTACTGACCGCTGGGGTGCGCCGCCAACAGTTGCGGGTGGAGAACTA CCTGTACGACGGCTCCACCTCCGGCGGCGTGGCCAACCCGGCCAACGACGGCAGCCGCAGCGCCCTGTATGACAAGGGCATCACCACACCGGTGTACGGC ATCGTCTACAAGCCTACCGAATCGGTGTCGCTGTATGCCAACCGCATCGAAGGCCTGTCCAAGGGCCCGACGGCCTCGGCCAACGCCATCAACCGCGGCG AAGCGTTCCCACCCGGGCGCACCAAGCAGATCGAAGCAGGCGTCAAGTACGATCAGGGCACCTTCGGCGCCAACCTTGCGGTCTTCCGTATCGAGAAGCC CAGTGACGGCTACCTCGACAGCAACACCGGGTTTTACCTGCGTGATGGCGAGCAGGTGAACCGCGGCATCGAGCTGAGCATCTTCGGTGAGCCACTGCCG GGCCTGCGCCTGCTGGCCGGCGGAACACGTCTTGATTCGGAGCTGAAGAAAACACAGAACGGCACCAACGACGGCAACCATGCCATTGGGGTCCCGACCT TCCAGCTGAACGCGAGTGTCGACTGGGACGTTCCAGGGCTGGACGGCGTGGCGCTCAATGCACGGATGCTGCGCACCGGCGGACAATATGCCGATCAGGC CAACACCCTGAGCCTGCCTACCTGGAACCGCTTCGATGCCGGTGCTCGTTACCGCTTCAAGGTCCAGGAGAAGGACATCACCTTGCGCATGAACGTCGAG AACATCAGCGACAAGAACTACTGGGCCTCGGCCAACGGGGGTTACCTGACCCAAGGCGAGCCTCGCCTGGTGAAGTTCTCGGGCACCGTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGATCCGGTGGCGGGCAGGGCCCTGATCAGCGCCCTGCTCGACGCGGTAACTCGATGCACACCCGCAGCCCCTCCAACGGGCTCTGCTCAAGGCTCATA CGCCCGCCCCAGGCTTCGACGATATCGCGCACGATCCCAAGCCCCAGGCCGTGGCCATTGACCTGCTCATCGAGCCGGGTGCCTCGTTCCAGCACCTGCG CTCGAGCAGCCTCGGGAATACCAGGGCCATCGTCGTCGATCAGCAGCCGGTAATGCTCCGGCTGTTCTTCGATGCTCAGTTGCACCTGGCTGTCAGCCCA CTTGCAGGCGTTGTCCAACAGGTTGCCGAGCAGCTCGAGGAGGTCTTCACGGTCCCAGGGCAGCAGCAGCCCGGGGGGGACTTGCTGGCTCAACTCCAGC CCTTCGCCATGGATCATCCCCAAGGTCGAGAGCAACCCGGGCAGCTCGGCATCACAGTCGAACTGCGCACCCGGCAAGGCATCGCCGGCCAGCCGGGCTC
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| Amino Acid Sequence |
>TonB-dependent receptor
MALRSPFRPTLLAVCCAASVTAHGADAVLELDATAVNAQATKPLRNAPVEEYAGGQVARGGQMGVLGNQDNMDVPFTMTSYTSKLIEDQQAEDVGDVLLN DPSVRQSVGFGNQSQVFVIRGLPLSGDDISYNGLYGVLPRQIISTDGVDRVEVFKGPNAFINGVSPTGGGLGGSVNLQPKRAGDTPTRRYTQDISTDGRI GEHLDIGQRFGADNRFGARLNLSQREGETAVEDQDQRSKLFVAGLDYQGDRFSVSTDFGYQKERVNHLRNSVQLGAGLTDIPRAPDASHNYGQDWTFTET EDTFGMVRGDWDLNDNWSAYLAGGVKHTRETGFYGTPTLTNAATGAATMGGSFIPHNEDNTTFMGGLNGKLQTGPVSHQLNLGASTIWTQQENAYVFYRG QPTNIYNTTPLPKPTAVTITGGELGDPGVTGKTRNRSIAFSDTLGFFDDTLLLTAGVRRQQLRVENYLYDGSTSGGVANPANDGSRSALYDKGITTPVYG IVYKPTESVSLYANRIEGLSKGPTASANAINRGEAFPPGRTKQIEAGVKYDQGTFGANLAVFRIEKPSDGYLDSNTGFYLRDGEQVNRGIELSIFGEPLP GLRLLAGGTRLDSELKKTQNGTNDGNHAIGVPTFQLNASVDWDVPGLDGVALNARMLRTGGQYADQANTLSLPTWNRFDAGARYRFKVQEKDITLRMNVE NISDKNYWASANGGYLTQGEPRLVKFSGTVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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