Pseudomonas vranovensis DSM 16006, H621_RS0114145

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 837 1003 5.4E-41
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 443 574 1.6E-8
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 715 1267 0.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 727 837 4.67E-22
CDD cd00130 PAS IPR000014 PAS domain 588 704 4.06958E-4
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 719 835 5.3E-16
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 835 1007 1.1E-45
Pfam PF00563 EAL domain IPR001633 EAL domain 1021 1256 1.4E-76
CDD cd00130 PAS IPR000014 PAS domain 724 826 2.46762E-10
Gene3D G3DSA:3.30.450.20 PAS domain - - 577 717 4.6E-19
CDD cd01948 EAL IPR001633 EAL domain 1021 1261 8.63295E-116
SMART SM00091 pas_2 IPR000014 PAS domain 579 645 0.37
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 431 565 5.76E-14
SMART SM00267 duf1_3 IPR000160 GGDEF domain 829 1005 3.6E-67
SMART SM00086 pac_2 IPR001610 PAC motif 787 829 1.0E-4
Pfam PF13426 PAS domain IPR000014 PAS domain 727 828 8.7E-14
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 840 1001 8.9E-51
SMART SM00091 pas_2 IPR000014 PAS domain 446 516 1.3
SMART SM00086 pac_2 IPR001610 PAC motif 524 567 1.5E-5
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 842 1011 1.6E-61
SMART SM00052 duf2_2 IPR001633 EAL domain 1015 1261 4.7E-128
Gene3D G3DSA:3.30.450.20 PAS domain - - 274 438 6.6E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 575 714 4.1E-9
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 845 1006 7.06E-50
SMART SM00091 pas_2 IPR000014 PAS domain 715 781 6.4E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 341 441 1.43E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 718 841 2.7E-27
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1020 1268 2.22E-93
SMART SM00086 pac_2 IPR001610 PAC motif 665 707 3.3E-4
MobiDBLite mobidb-lite consensus disorder prediction - - 1 20 -
Pfam PF08447 PAS fold IPR013655 PAS fold-3 470 560 2.4E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 439 565 1.1E-15
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1016 1270 1.1E-102
Pfam PF13426 PAS domain IPR000014 PAS domain 597 706 6.0E-4
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1015 1272 2.3E-106
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 564 705 8.03E-16
CDD cd01949 GGDEF IPR000160 GGDEF domain 841 1003 4.66153E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.