Pseudomonas vranovensis DSM 16006, H621_RS0109725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAGTTCTTCCGGCAACTGCGCCAGTGCCTGAAGGTAGGCACGCTCCAGGTCCTGGCGCCGGTAGTGATTGAACAGCACGCGCTTGGCCACGGTGGTGA GGAACGCCCGTGGCTCGTTGAGCGCCGGCGTATCGCGGGCCTGCAACAGGCGCATGAAGGTGTCCTGGGCAAGGTCGGCCGCGTTGTCCGGGCAGCCCAG GCGTCGGCGCAGCCAGCCGGTCAGCCAGTTGTGATGGGCGTGGTAGAGGCCTTCGAGCGAAGAAGGGGAGGACGCACTGGGCACCGTGAACACTCCGGCG CCAAGCTGCGCAGCAGAATAAGAATTGTTCGCATTGTAGAGGGGTGCAGTGTGCTCGGCAATCAGGCGCTGACTGATGGCGAGCGCGGACGCGGCAAAAT GTAAATATCGTAAATACGCTTTACTCTCAATTGAGAATCTCTAGCATTCGCGCCTTGAACGCATTTACTCAATCTTTACAGTTCTCAGGGAGAGGTCCTC
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| DNA Sequence for Gene |
>H621_RS0109725
GTGTCCCCGTTTTTCACCAAGTCGTGCCTTGCGCTCACCATTTGCTCGCTGTACACCGCCCAGGCCAGCGCCGAAGCCAAATCGCTGGAACTGGACAACG TGGTGGTGACCGCCTCGGGTTTCTCCCAGCAGATCAAGGATGCGCCGGCGTCGATTTCGGTGATTACCCGCGAGCAGATCGAGAACAAGTCCTACCGTGA TGTCACAGACGCCCTGCGCGATGTGCCCGGCGTGGTCGTCACCGGCGGCGCCAGCTCCAGTGACATCAGCATTCGCGGCATGGCGTCCAAGTACACGCTG ATGCTGGTCGACGGCAAGCGCCAGGACTCGCGGGCCACCCGTCCCAACAGCGACGGTGCCGGTATCGAGCAAGGCTGGATGCCGCCGCTTGAAGCCATCG AGCGGATCGAAGTGGTGCGTGGCCCGATGTCGTCGCTGTATGGCTCCGACGCCATGGGGGGGGTGATCAACATCATCACCCGCAAAGTGACACCGACCTG GTATGGCGGCCTGCGCAGCGAAGCGACCTTCCAGGACCGCTCCGACTCGGGTGACTACAACACCACCAGTGCGTTTCTTTCCGGGCCCCTGGTTGAAGGG CTGGTGGGCTTGCAGCTGTACGGTCTGACCTCCCATCGCGATGAAGACCACATCGTCAACGGCTTCAACGAGCAGAGTACCGACAGCGCCACCGCCAAGC TCTCGTTCACCCCGGACGAACACAACGACATCACCCTGGAAGCGGGCAAGTCCGAGCAGGAGCGCAACGCTACCGTGGGTCGCTCGGCGCGCTCTTCCGA CAGCGAAAACGATTACGACCGCACCAACTTCTCGATCACCCACTCCGGCCGCTGGGACAGCCTGACCAGTGAAAGCTACCTGCAGCGCGAGAAAATCGAG AACCCGGGCCGGCGCATGGAGCTGGAGAACACGGTCCTCAACTCCCAGGTCTCTTACTTCAGCGAATCGCACATCACCACCTTCGGTGGCCAGTACAAGT ACGAAGACCTGACGGATGAAGGCAACCAGCTGGCGTCGGCCTCCAGTGTGAACCAGTTGACGCGTTGGTCGTGGGCCCTGTTCGCCGAAGACGAGTGGCG CCTGACCGATGACTTCGCCCTGACCGGCGGCCTGCGCATGGACCGCGACGAGAACTACGGCACGCACTGGTCGCCGCGTCTGTACGGGGTTTATCACCCT ACCGAGCACTGGACCGTCAAGGGCGGTGTGTCCAGCGGTTATCGCTCGCCGGATATCCGCGCAGCGGTCGATGACTGGGGCCAGATCACTGGCGGCGGTG GCGACCCGGCAATCATCGTTGGCAACTCCAACCTCAAGCCCGAAGAGAGCCTGAGCCAGGAAATCGGCGTGATCTGGGACAACCTGGAAGGTTTCTCCAC CGGCCTTACCGTGTTCAACACCGACTTCAAGGACAAGATCACTGAACAGCGCCGCTGCACCGACAGCACCGGCAATGCGTCGGGCCAGTGCCAGATCGGC GGCACCTCGTACAAGTTCATCAGCGACCGCGTGAACGTCGATGAAGCGCAAATGCGCGGTATCGAAGCGACCCTGGACTGGGACATCACCCAGAGCCTGT CGCTGGCCACCAACTACACCTTCACCGACTCCGAGCAGAAGAGTGGCCCGCAGAAGGGCAAGGCCCTGAACCAGATGCCACGCCACATGTTCAACGCCAC CCTGGACTGGCAGACCACCGATCAGCTGGGCACCTGGGCGCGGATGAACTACCGCAGCCGCACCTCAGACTACCTGGGCCGCACCACCATGTCTGATGGC ACGCCGTCCTACACCTTCGTCGACCTGGGCGGCACCTACCGGGTGACCAAGAACCTCAAGTTGCTGGCCGGTGTGTACAACGTGTTCAACAAGGAAGTGG ACTACGAGAACTTCCAGACCGTGCTCGATGGCCGTCGCTACACCGTGGGTGTCGACCTGTCGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTGGGCGCCCTCGGCTTTGCCTATGAGAATATAAATCATTACTATTGGCGACTCTTCACAAGGAATGGATGCCATGAAAAGCAAAGCCGCCGGGCTGC CCCTCAGTTATCGCCTGGCTGTGACGTCGCGTTGCCTGGCCGCCGTATTTGGCGGTTACCTGCTGGCGTCGATGTCCAGCGTGTGCATCAGCCTGCTGGC GCCGATGCCCAAGGCTGAAGCAGTGATCAGCGGCATGATGCTGTCGTTCCTGTTCTACCTGGTGGCCTTCCTCTGGTGTTTTGCCAGCCGCAGTGCGTGG CAGGCCTGGCTTGGGGTGTTGTTGCCAAGCCTTGTGCTGGGCGCGATCAATGGCCTGGCCTATTGGGTGAAAAGCTGATGAAAGAGGGATTTCGCCAGGC CATGGCCTGGCTGCACACCTGGACCGGTCTGATATTCGGCTGGTTGCTGTTCGCGATTTTTCTCACCGGGACCCTGTCGTACTTCAAGGAAGAGATCACA
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| Amino Acid Sequence |
>outer membrane siderophore receptor
MSPFFTKSCLALTICSLYTAQASAEAKSLELDNVVVTASGFSQQIKDAPASISVITREQIENKSYRDVTDALRDVPGVVVTGGASSSDISIRGMASKYTL MLVDGKRQDSRATRPNSDGAGIEQGWMPPLEAIERIEVVRGPMSSLYGSDAMGGVINIITRKVTPTWYGGLRSEATFQDRSDSGDYNTTSAFLSGPLVEG LVGLQLYGLTSHRDEDHIVNGFNEQSTDSATAKLSFTPDEHNDITLEAGKSEQERNATVGRSARSSDSENDYDRTNFSITHSGRWDSLTSESYLQREKIE NPGRRMELENTVLNSQVSYFSESHITTFGGQYKYEDLTDEGNQLASASSVNQLTRWSWALFAEDEWRLTDDFALTGGLRMDRDENYGTHWSPRLYGVYHP TEHWTVKGGVSSGYRSPDIRAAVDDWGQITGGGGDPAIIVGNSNLKPEESLSQEIGVIWDNLEGFSTGLTVFNTDFKDKITEQRRCTDSTGNASGQCQIG GTSYKFISDRVNVDEAQMRGIEATLDWDITQSLSLATNYTFTDSEQKSGPQKGKALNQMPRHMFNATLDWQTTDQLGTWARMNYRSRTSDYLGRTTMSDG TPSYTFVDLGGTYRVTKNLKLLAGVYNVFNKEVDYENFQTVLDGRRYTVGVDLSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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