Pseudomonas vranovensis DSM 16006, H621_RS0108280
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACCCTGACACCGAGCTGGGCCCATTGATAACCGCGCAACATCGCGACCGGGTTGCCGCCATGGTCGAGCGCGCCATCGCCCAACCGCATATCCGCCTG GTGACTGGTGGCAAAGCAGTGCCGGGCGACGGTTACTTCTTCGAGCCGACGGTGCTGGCCGATGCCCAGCAGGATGACGAGATCGTGCAGCGCGAGGTCT TCGGCCCGGTGGTCTCGGTTACCCGCTTCGATGATGAAGCGCAGGCCCTGGCCTGGGCGAACGACTCCGACTACGGCCTGGCCTCGTCACTGTGGACGGC GGATGTCGGACGCGCCCATCGTGTTTCGGCACGCCTGCAATACGGTTGTACCTGGGTCAATACGCATTTTATGCTGGTCAGCGAAATGCCCCACGGCGGT CAGAAACTGTCTGGCTACGGCAAAGACATGTCCATGTACGGACTGGAAGACTACACCTGCATTCGGCATGTGATGTTCAAACACTAAGGTAAGGAAACCC
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| DNA Sequence for Gene |
>H621_RS0108280
ATGGAAATTACCCGGCGCGACTTCATCAATGGAGTCGCCATCGGCATTGCAGCGGGCCTGACCCCGCTGCAACTGCTCCAGGCTGCCCAGGGCGGGCGCT ACTATCCTCCGGCGCTGACCGGCTTGCGTGGTAGCCACGTCGGCGCCTTTGAAGTCGCGCACCAGATGGGCTGGGAGAAAAAAGCCTTCGCCACCGATGC CCTGCCGATCAGCGAGACCTATGACCTGGTGGTGGTCGGCGGCGGCATCAGTGGGCTGTCGGCGGCGTATTTCTATCGCCAGAAGCACCCCCAGGCAAAG ATTCTGATCCTGGAAAACCACGACGACTTCGGTGGCCATGCCAAGCGCAACGAGTTCACTGCCGGCGGACGGATGATCATCGGCTATGGCGGCAGTGAAG CCTTCCAGTCACCCAACCACCTGTACAGCGCCGAGGTCAATGGCCTGCTCAAAGACCTTGGGGTAGACATCAAGCGCTTTGAAACCGCCTTCGATCGCAG CTTCTACCCGGACCTTGGACTTTCGCGCGGGGTGTTTTTCGACAAGGAGCATTTTGGCGAAGACAAACTGGTGACCGGTGACCCAACCCCCATGGTCGCC GACGATATAGCCCCCGAGCAGCTCAATGCCCGCACGGTGCGCGACTTCATCAACGACTTTCCCTTGTCCGACAGCGACCGCAAGGCTCTGGTCGACCTGC ACGAAGCGCCCCGGGACTACCTCGCCGGCAAGTCCCAGGACGAAAAGACCGCCTACCTGGAGCGCACCAGCTACCAGGACTTCCTGCTCAAGGACGTCGG CCTGTCGCCCGTGGCGGTAAAGTACTTCCAGGGGCGCACCAACGATTTCATGGCCCTGAGCATCGATACCGTCGCCGCCGCCGATGCCTATTACGTTGGC TTCCCAGGCTTTGCCGCCATGGACCTGGAGCCGATCAGCGAAGAAGCCAGGGCCGAAATGGAAGAGCCCTACATCTATCACTTCCCTGATGGCAACGCCT CACTGGCGCGCCTGCTGGTGCGCAACCTGATACCTGGTGTCGCGCCGGGCACCGGCATGGAAGACATTGTCCTGGCCAACTTCGACTACAGCCAACTCGA CCGCGCAGGCCAGCCAGTACGCCTGCGCCTGAACAGCACCGCAGTCAGCGTGCGCAATCAGGACGGCGCGGTGAATGTCGGCTACAGCCAGGGCGGAAAA CTGACCCAGGTCCGCGGCAAGCACTGCATCCTGGCCTGCTACAACATGATGATCCCCTACCTGCTTCGCGACCTGTCGGTTGAACAGGCCCATGCCTTGA GCCAGAACGTGAAGTTCCCGCTGGTGTACACCAAGGTGATCGTGCGCAACTGGCAGGCCTTCAAGAAGCTTCGTGTACACGAGATCTATGCCGCGACCCA GCCCTATAGCCGCATCAAGCTGGATTACCCGGTAAGCATGGGTGGCTATGAGCACCCCCGCGATCCGGCGCAGCCCATTGGCCTGCACATGGTCTACGTA CCCACCAGCCCCGACAGCAAGATGAACGGTCGCGACCAGGCACGCGCCGGGCGTGCACGGTTGTACGGCACCCCATTTGAAACCCTGGAGAGCCAACTGC GCGAGCAGTTGCAGCGCATGCTGGGACCTGGCGGTTTCGACCACCAACAGGACATCCTGGCAATCACCGTCAACCGTTGGCCACACGGCTATGCCTGCTT CACCAACACCCTCTATGACGACCCCGAGCAGACCGAACAATGGATGGAACTGGCGCGCAAGCCCGTGGGCAAGGTGAGCATCGCCAACTCCGATGCGGCC TGGAGTGCGTATGCCCATGCGGCCATTGACGAAGCCTGGCGCGCGGTAGGTGAGCTGGCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACGGAATCAACTGCCTTGCATAGAACCTGTGGGAGCGGGCTTGCCCTCGATCAGCCGCAGAGCGGCCGTATGTAATCCTGGCCCTCATCGCTGGCAAGC TGCCGCCCACAGGTGTCCAACCCCTTCAATCGCGCAGGTCAGACTCGTGAATCGGGTTGGCCCGGCTGGTCGCCCGCTGGTACTGGGCCGGCCAGGTGGC TTTGTTGCCCCCCAGGTCGTCATCGGCATGCAAGGGCCAGTACGGGTCACGCAGCAGTTCCCGAGCCAGGAAGATGATATCGGCCTGGGCCGTACGCAAG ATGGTTTCGGCCTGCATCGGGTCGGTGATCATCCCAACCGTGCCGGTGGCGATCCCCGACTCCTCCCGCACCTTCGCCGCAAACTGGGTCTGGTACCCAG GCCCCGTGGGAATTTCGGCATTCACCGACGTCCCGCCGGACGATACATCGATCAAGTCCACACCCAGCTTTCTCAAGCGCTTGGCCAGCTCGACGGTTTC
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| Amino Acid Sequence |
>spermidine dehydrogenase
MEITRRDFINGVAIGIAAGLTPLQLLQAAQGGRYYPPALTGLRGSHVGAFEVAHQMGWEKKAFATDALPISETYDLVVVGGGISGLSAAYFYRQKHPQAK ILILENHDDFGGHAKRNEFTAGGRMIIGYGGSEAFQSPNHLYSAEVNGLLKDLGVDIKRFETAFDRSFYPDLGLSRGVFFDKEHFGEDKLVTGDPTPMVA DDIAPEQLNARTVRDFINDFPLSDSDRKALVDLHEAPRDYLAGKSQDEKTAYLERTSYQDFLLKDVGLSPVAVKYFQGRTNDFMALSIDTVAAADAYYVG FPGFAAMDLEPISEEARAEMEEPYIYHFPDGNASLARLLVRNLIPGVAPGTGMEDIVLANFDYSQLDRAGQPVRLRLNSTAVSVRNQDGAVNVGYSQGGK LTQVRGKHCILACYNMMIPYLLRDLSVEQAHALSQNVKFPLVYTKVIVRNWQAFKKLRVHEIYAATQPYSRIKLDYPVSMGGYEHPRDPAQPIGLHMVYV PTSPDSKMNGRDQARAGRARLYGTPFETLESQLREQLQRMLGPGGFDHQQDILAITVNRWPHGYACFTNTLYDDPEQTEQWMELARKPVGKVSIANSDAA WSAYAHAAIDEAWRAVGELA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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