Pseudomonas vranovensis DSM 16006, H621_RS0105020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATGATCGGGATCTGGTTGTTCGCGGCGCGCAAGCGGCGACAGGCAGTCAGGCCATCTTCGCCTGGCAACATAAGGTCGAGCACCACCAGGTTGAAGAC CTCGCGGGCCAGCAGGCGGTCCATCTGTTCGGTGTTGGGTACTGCACGAGCGCGGTAGCCCTTGCTGGTGAAGAAACGCTCCAGCAGGCTGCTCAAGCCC GGGTCGTCGTCGACGATGAGGATTTTTTCGCCTTCAGCGGTTTGTGCAGTGCTGCTCATGGGTAGCTCCTTTAATCTCGGCACGCATTATGGCTTAGCCG CCATTGGCCGTGCCGTGTGCATTGTTAGCAGATTTTTCCCCTTGTGCCAGTTTTGCCCGGCCTGCATCTGGCTCCCTGCCATCACCGCAACCCCGACGCA CTGGGTATAATGCGCCGCTTTCGGACTGCGCCGCATTGACTTTCAGCGCCTTCAGGCGCCCGCCCGCGGCCTTTGTATTCACAATATGTCAGGTGGTTTT
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| DNA Sequence for Gene |
>H621_RS0105020
ATGGACAGCATCAACAGCCGCATCGCCGAGGAACTCGGTGTCCGCCCGCAACAGGTCGAAGCGGCCGTGGCCCTGCTTGATGAAGGCTCGACAGTGCCTT TTATCGCCCGTTACCGTAAAGAAGTGACTGGCAGCCTGGACGACACCCAACTGCGCCATCTGGAAGAACGCCTGCGTTACCTGCGCGAACTGGACGATCG CCGCGCCAGCATCCTGGCCAGCATCGAAGAGCAAGGCAAGCTGACCCCGGAACTGGCCCGCGAAATCAAGCTGGCCGACACCAAGACCCGCCTCGAAGAC CTCTACCTGCCCTACAAGCAAAAGCGTCGCACCAAGGGCCAGATTGCCCTGGAAGCCGGCCTGGGCGAGCTGGCCGACGGACTGTTGAACGACCCGCAAC TGAGCCCTGAAGTCGAAGCCGCCCGCTTCGTCGATGCCGACAAAGGCGTGGCCGACGTCAAGGCGGCCCTCGAAGGTGCCAAGTACATCCTCATGGAACG TTTCGCCGAAGACGCCAGCCTGCTCGACAAGCTGCGCAGCTTCCTCAAGCAGGAAGCGGTACTCAGCGCCCGCCTGGTCGCCGGCAAAGAGGAAGAAGGC GCCAAGTTCCGCGACTACTTCGAGCATGACGAACTGCTCAAGAGCGTACCGTCGCACCGCGCCCTGGCGATTTTCCGTGGCCGCAACGAAGGCGTGCTGG CCGCTTCGCTGAAAGTCGGCGAAGAGCTGCCAGGCACCCTGCACCCATGCGAGATGATGATCGCCGAGCGTTTCGGCCTGCAGAACCAGAACCGTCCTGC CGACAAATGGCTGGCCGAAGTGGTGCGCTGGACCTGGAAGGTCAAACTCTACAGCCACCTGGAAACCGACCTGTTCGGCGAGCTGCGCGATAACGCCGAA GGCGAGGCAATCAACGTCTTCGCCCACAATCTGCACGACCTGCTGCTGGCTGCCCCGGCCGGCCCACGCGCCACCCTGGGCCTTGATCCGGGCCTGCGGA CCGGCTGCAAGGTCGCGGTCGTGGATGCCACCGGCAAGCTGCTCGACACTGCCACCGTGTACCCGCACGTACCGAAAAACCAGTGGGACCAGACCATCGC CGTGCTCGCCGCCCTGTGCGCCAAGCACTCGGTGGAGCTGATCGCCATCGGCAACGGTACCGCCAGCCGCGAAACCGACAAGCTGGCAGCCGAGCTGATC AAGAAATACCCGGCCCTGAAGATGACCAAGATCATGGTCTCCGAAGCCGGTGCATCGGTGTATTCGGCCTCGGAACTGGCGGCCCGTGAGTTCCCGGACC TGGACGTATCGATCCGTGGTGCGGTGTCCATCGCCCGTCGCCTGCAGGACCCGCTGGCAGAGCTGGTGAAGATCGACCCGAAGTCCATCGGCGTCGGCCA GTACCAGCATGATGTCTCCCAGCTCAAGCTGGCCCGCGGCCTGGATGCCGTGGTCGAGGACTGCGTGAACGCCGTCGGCGTTGATGTCAACACCGCCTCG GTCGCGCTGCTGGCCCGCATCTCCGGCCTCAACAGCACCCTGGCACAGAACATCGTCGCCCATCGTGATGCCAACGGCGCCTTCAAGACCCGCGCAGCGC TGAAGAAAGTCAGCCGCCTGGGCGAAAAAACCTTCGAGCAGGCCGCAGGCTTCCTGCGCGTGATGAACGGCGACAACCCGCTGGATGCCTCGGCTGTACA CCCTGAGGCCTACCCGCTGGTGCAACGCATTGCCGCCGAAACCGACCGCGACATCCGCTCGCTGATTGGCGACAGCGGTTTCCTCAAGCGCCTGGACCCA AAGAAATTCACCGACGAAATCTTCGGCCTGCCGACCGTCACCGACATCCTCCAGGAACTGGACAAGCCCGGACGCGACCCTCGCCCCGAGTTCAAGACCG CCGAGTTCCAGGAAGGCGTCGAAGACCTCAAGGACCTGCAACTGGGGATGATCCTCGAAGGCGTGGTCACCAACGTCACCAACTTCGGCGCCTTCGTCGA CATTGGTGTACACCAGGATGGCCTGGTCCACATCTCGGCGCTGTCGGAGAAGTTCATCAAGGACCCGCGTGAGGCGGTCAAGGCTGGCGACGTGGTCAAG GTCAAGGTCATGGAAATCGACATCCCGCGCAAGCGCGTCGGTTTGTCGATGCGCATGAGCGACACCCCGGGCGAGAAAGTCGATGGCGCCCGTGGCAGCC GTCCAGGTTCGGCACCGCGCCAGCAGAGCGCCCCGGCCCGCGCCAAGGAAACCCCGGTACCGGCCAACAACGCCATGGCGGCGCTGTTTGCCAACGCCAA GCAGTTGAAGAAGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAACTGCCGCAAGAGGTCACCCTCAGCGCCTTCAGCCAACTGCTCGGCTGCCACCTGCAACGCCTGGAACCAGGCGTTGCGCAAATGACCCTGGCGCT GGAGCCGCACCTGCGCAACCGAGGCGGCAAGTTGCATGGCGGGGCGATCTTCAGCCTGGTCGATACAGCCATGGGCCTGGCCTGTTCAAGCGCCCACGGC TTCGATCAGCAGAGCGTCACCCTGGAATGCAAGATCAACTACCTGCGCTCCGTCGGCGACGGCGAAGTGCTGTGCATCGCCCGGGTGCTGCATGCCGGGC GTCGCACCCTGGTGGTCGACGCCGATGTACTTCAGGGCGACAAGCTGGTGGCAAAAGCGCAAGGGACATTCGTCGTCCTCTAGCCGCAAACAGCCAAACT GCGATACTTTCGGCAGAGCGCAGGCGCTGCCGGAAGCCAGCCAATACCAGGCGACAACGCCAGTTCCTCTGTCCACCCTTGTAGACCGTCAACTCTACCC
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| Amino Acid Sequence |
>transcription accessory protein
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDDRRASILASIEEQGKLTPELAREIKLADTKTRLED LYLPYKQKRRTKGQIALEAGLGELADGLLNDPQLSPEVEAARFVDADKGVADVKAALEGAKYILMERFAEDASLLDKLRSFLKQEAVLSARLVAGKEEEG AKFRDYFEHDELLKSVPSHRALAIFRGRNEGVLAASLKVGEELPGTLHPCEMMIAERFGLQNQNRPADKWLAEVVRWTWKVKLYSHLETDLFGELRDNAE GEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDATGKLLDTATVYPHVPKNQWDQTIAVLAALCAKHSVELIAIGNGTASRETDKLAAELI KKYPALKMTKIMVSEAGASVYSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTAS VALLARISGLNSTLAQNIVAHRDANGAFKTRAALKKVSRLGEKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIGDSGFLKRLDP KKFTDEIFGLPTVTDILQELDKPGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVK VKVMEIDIPRKRVGLSMRMSDTPGEKVDGARGSRPGSAPRQQSAPARAKETPVPANNAMAALFANAKQLKKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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