Pseudomonas vranovensis DSM 16006, H621_RS0104580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGCCCAGGGTGGCCCGCTGATGCACGTGATCGCCGGTAAGGCGGTGTGCTTCAAGGAGGCGCTGGAGCCAGGCTTCAAGACCTACCAACAGCAGGTGA TCGACAACGCCCAGGCCATGGCCAAGGTGTTCATCGACCGTGGTTTCGATGTGGTGTCCGGTGGTACCGACAACCACCTGTTCCTGGTCAGCCTGATCCG CCAGGGCCTGACCGGCAAAGACGCCGACGCCGCCCTGGGCCGCGCCCACATCACCGTGAACAAGAACGCCGTGCCCAACGATCCGCAGTCGCCGTTCGTG ACCTCGGGCCTGCGTATCGGCACCCCGGCGGTCACCAGCCGCGGCTTCAAGGTTGCCCAGTGCGTGGAGCTGGCCGGCTGGATCTGCGACATCCTCGACA ACCTCGGTGATGCCGATGTCGAGGCCGATGTTGCGAAGAACGTGTCGGCACTGTGTGCAGATTTTCCGGTTTATCGCTGAGTGGTCCAGGAGTAAAGACT
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| DNA Sequence for Gene |
>H621_RS0104580
ATGCAACGTTACTCAGGCTTCGGCCTCTTCAAGCACTCGCTCAGCCACCACGAAAACTGGCAGCGCATGTGGCGCACGCCAACCCCGAAAAAGGTCTACG ACGTGGTCATCGTCGGCGGGGGCGGGCACGGCCTGGCCACTGCCTACTACCTGGCCAAGGAACACGGCATCACCAATGTGGCGGTGGTTGAGAAAGGCTG GCTGGGTGGCGGCAATACCGCGCGCAACACCACCATCGTGCGCTCCAACTACCTGTGGGATGAGTCGGCGCACCTTTATGAGCACGCGATGAAGCTCTGG GAAGGCCTGTCGCAAGACATCAACTACAACGTGATGTTCTCCCAGCGCGGCGTCTACAACCTGTGCCACACCCTGCAGGACATGCGCGACTCGGAGCGCC GGGTCAGCGCCAACCGCCTCAATGGCGTGGACGGCGAGCTGCTCAACGCCCAACAGGTGGCCGAAGAGATCCCCTACCTGGACTGCTCCAAGAACACGCG CTACCCGATCATGGGCGCCACCGTGCAGCGTCGCGGTGGCGTGGCCCGTCACGACGCCGTGGCCTGGGGCTTTGCCCGCGCCGCCGACGCCTTGGGCGTT GACCTGATCCAGCAGACCGAGGTGATCGGCTTTCGCAAGGAAAACGGCGTGGTCATCGGGGTGGAAACCAACAAGGGCTTTATCGGCGCCAAACGCGTCG GTGTGGTGACTGCCGGTAACTCCGGGCACATGGCCAAGCTCGCCGGCTTCCGCCTGCCGATCGAGTCGCACCCGCTGCAGGCGCTGGTGTCCGAGCCGCT CAAGCCGATCATCGACAGCGTGATCATGTCCAACGCCGTACATGGCTACATCAGCCAGTCCGACAAGGGCGACCTGGTCATCGGCGCCGGTATCGACGGC TGGGTCGGCTACGGCCAGCGTGGCTCGTACCCGGTGATCGAGCACACCCTGCAGGCCATCGTCGAAATGTTCCCGATTCTTTCGCGGGTGCGCATGAACC GCCAGTGGGGCGGCATCGTCGACACCACGCCGGACGCTTGCCCGATCATCTCCAAGACCCCGGTGAAGAACATGTTCTTCAACTGCGGTTGGGGGACCGG TGGCTTCAAGGCCACCCCCGGCTCGGGCAACGTCTTTGCCGCAAGCTTGGCCAAGGGCGAAATGCACCCGCTGGCCAAACCCTTTTCCATCGACCGTTTC CACAACGGTGCACTGATCGACGAACACGGCGCCGCCGCTGTCGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAAATCCCCATGTTGCATATCTTCTGTCCCCATTGCGGCGAACTGCGCTCCGAAGAGGAGTTCCACGCCGCCGGTCAAGCGCACATTCCGCGGCC CATGGACCCCAACGCCTGCACCGACGAGGAGTGGGGCGACTACATGTTCTTCCGCGACAACCCGCGTGGCCTGCATCACGAGCTGTGGATTCATGCCGCC GGATGCCGCCAGTACTTCAATGCCACCCGCGACACGGTGACCTACGAGATTCTGGAAACCTATCCGATCGGCGCCAAGCCGCAAGTGACCGGCAAAAACA CCAGCCCGCAGTTGGCAGTCAGTGGTCAGGGAGAAAAGGTATGAGCCAGGTCTATCGCCTGTCCAACGGCGGTCGTATCGATCGCAGCAAAGTCTTGAAC TTCACTTTCAACGGACAGACCTACCAGGGCTATGCCGGCGACACCCTGGCGGCCGCCTTGCTGGCCAACGGCGTGGACATCGTCGGGCGCAGCTTCAAGT
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDINYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNAQQVAEEIPYLDCSKNTRYPIMGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVIGFRKENGVVIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPIESHPLQALVSEPLKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTLQAIVEMFPILSRVRMNRQWGGIVDTTPDACPIISKTPVKNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAKPFSIDRF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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