Pseudomonas vranovensis DSM 16006, H621_RS0103755
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCACGGGCGATCAACAAGCGGAAGTCGAACTGCCGCACAAGATGCTGATAACGGGTGACTTTGGCCTGATTGATGATCGTGCCCTCGAAGACCGACAA GTCATGCGCGTGGACAAACACAACTTCAACAACGTGCTCGACGATGCTGACGTTCGTTTGGACATGAACGTGCCCTTGGCGCTGAGTCAGGCACCAGATG CAGAGATGCAGGTGCGCCTGCAGTTTCGATCGATCAACGACTTCGGGCCGGATGCAATTGCCCGCCAGGTCCCGGAGCTGAACAAACTACTTGAACTGCG TGAAGCACTGGTGGCCCTCAAGGGCCCGCTGGGTAACGTTCCGGCCTTCCGAAAACAGTTGCAGTACCTGCTGAGCGATGAGCAGTCGCGCAACCAACTG GCCCAGGAGCTGGAGCTTGTTCTGGAAGCCCCCAACGAAGATTGACAGCCCGCCTTGAGTCCGGCCCTGCCGGTCTTGAAATCGACAACGGAGCGACACG
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| DNA Sequence for Gene |
>H621_RS0103755
ATGCCAACTAGGACCACCCCGAACACGTCACCAACAACAGTGGGTGACCCCTGTCTGCTTGATCAAATCATGGCCGAAACCATGTTGCAGCCAACCCAGG AAGGTTACCTGATCGCCAAGCAAGGGGTTGCAGCATTTATTACGGAAATACTGAAAAGCAACGAGCGCGACCAACTCATCAACAAGCATCGTGTCGATCT AATGATTGCCGAACTGGACCGCGCACTCGGGCGGCAAATGGACATCATCTTGCATCAACCCGAATACCAGCAACTGGAATCAGCCTGGCGCGGCCTGAAG CTGTTAGTGGACCGAACCGACTTTCGCGAGAACATAAAACTCGAGGTGTTGCACATCAGCAAGAATGACTTGCTGGAAGACTTCGATAATGCCGGCGACA TTACCAGCAGCGGTCTTTACAAACATGTCTACACCGCTGGCTTTGGACAATTCGGCGGTGAACCGGTTGCCGCCATGATCGGCAATTACTCATTTGGCCC GTCTTCCAGTGACATAAAGCTGCTTAGTTATGTCGCCTCCGTGGCCGCCATGTCACATGCACCATTCATCACAGCCCCCGGGCCTGATTTTTTCAACCTG AACAGCTTTGAAGACCTGCCTAATCTGAAAGAGGTGAAGGACATCTTTGAGGGGCCCCGCTTCGCCAAATGGCGCTCCTTTCGCGATGCCGAGGATTCAC GCAACGTCGGATTGGCATTGCCACGCTTCATGCTGCGCCAGCCTTACGAGCGTAACGAACACCCCATAACCAGCTTCAGCTATGACGAAAACATTGACGG CGAGCACAGTAACTACTTGTGGGGCAATGCCGCGTTCCTGCTGGCCAGTTGCATCAACGAAAGCTTTGCCCGTTACCGCTGGTGCCCAAATATCATCGGC CCGCAGTCCGGCGGTGCGGTGGACGATCTGCCGGTTCATCTGTATGAGTCCCTTGGCCGGTTACAGGCAAAAATCCCCACTGAGGTGTTGATATCGGACC GCAAGGAATTTGAACTGGCCGAGGAAGGTTTCATCGCCCTGACCATGCGCAAGGACAGCGACAATGCCGCGTTCTTCTCGGCCAACTCGGCGCAGCGACC CAAGGTGTTCCCCAGAACGCCCGAAGGCCAGGAAGCACAGACCAACTACAAATTGGGTACTCAGTTACCTTACCTGTTCATCGTCAACCGCCTGGCCCAC TACATCAAGGTTCTGCAGCGCGAGCAGATCGGTAGCTGGAAGGAACGCCAGGACCTGCAAAGCGAACTCAGCCGCTGGATCAAACAGTATGTAGCCGATC AGGAAAACCCTTCTGCCGATGTCCGCAGTCGCCGTCCATTACGCGCGGCCCGAATTGAAGTGACCGATGTTGCCGGCGATCCAGGTTGGTACCAGGTTTC GCTCGCGGTACGCCCTCACTTCAAATACATGGGCGCCAACTTCGAGATTTCCCTGGTAGGGCGGCTCGACACCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGCCTGTTTGAGCGCCTGAAATCCGATACACCTGCGCGGCGCCCGTCGCATTGCCAGGAATACGTCGCAGAGAAGTTCGAGGCGATCAAACAGCACCT GGAGCGCCTGCTGAACAGCCGTCAAGGCAGCTCGCAAAGTAGTCCAGCACTGGGCTTGCGCGACTTCAACGACCATGCACTAAGCCGCGGTGACGTATTG AAACAGATCGCTGCCGACATTCGTCGCACCATCCATTTGTACGAGCCGCGCATCAAGGTATGCGCAATACGGTGTCAGCCTGATCCCGAGGTCCCCCTGC AGTTGGACTTTCGACTCGAATGCCAACTGCAGGTACGCAACCAGCAACAGCAGTTGCAAATCGAGCTACTGGTCAATGGCCATAACCGCTACACCAAAGT GAGGTAAGCCATGACCCTCAAAGACCGCTTTGGCGAAGAGTTGAGCTACCTGCGAGAGTTGGGTGCCGAGTTTGCCCAGGACAACCCGCAACTGAGCCGT
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| Amino Acid Sequence |
>type VI secretion protein
MPTRTTPNTSPTTVGDPCLLDQIMAETMLQPTQEGYLIAKQGVAAFITEILKSNERDQLINKHRVDLMIAELDRALGRQMDIILHQPEYQQLESAWRGLK LLVDRTDFRENIKLEVLHISKNDLLEDFDNAGDITSSGLYKHVYTAGFGQFGGEPVAAMIGNYSFGPSSSDIKLLSYVASVAAMSHAPFITAPGPDFFNL NSFEDLPNLKEVKDIFEGPRFAKWRSFRDAEDSRNVGLALPRFMLRQPYERNEHPITSFSYDENIDGEHSNYLWGNAAFLLASCINESFARYRWCPNIIG PQSGGAVDDLPVHLYESLGRLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSAQRPKVFPRTPEGQEAQTNYKLGTQLPYLFIVNRLAH YIKVLQREQIGSWKERQDLQSELSRWIKQYVADQENPSADVRSRRPLRAARIEVTDVAGDPGWYQVSLAVRPHFKYMGANFEISLVGRLDTQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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