Pseudomonas vranovensis DSM 16006, H621_RS0103740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTACCAACCGCAACCTGCCGCTGGCACTCGGCGTGGGCGACATCAGCCTCGCCACCGAGGCGACTCCTCCCCTGGCCAGTTACCGCAACATCACTCGTC CAACCCGCCCCTACCGCCCGGTACTCGACGGTCAACTGCAATGGACGTTGATCTCCAACCTGTCGCTCAACTACCTGTCACTGCTCTCGGCCGAGCCGCT CAAAGCTGTGATCAGTGCCTATGACTTCGCGGCCTTGCATGACATCCAGCAGGCCCGCGCCACCCGCAAGCGCCTCAACGGTATTGGCCAAGCCCGCACC GCCCCCCTGGACTGGTTGATCAAGGGCTTGCCCATACGCGGCCTGCAAACCCGGTTGGAGCTCGACCAGGACGCTTTCTTGTGCGAAGGCGACCTGTACC TGTTCGGCACAGTCCTTTCGCATTTCTTCGCACTGTACGCCAGCGTCAATTCCTTCCATCAACTGGAAGTGATCAACACAACCAACAACGAGCACTACAC
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| DNA Sequence for Gene |
>H621_RS0103740
ATGGCCTTTGCTGACCGGCAGACAACCACTGATCTAGCCAACACGTTGCTCGCCGAGGCCCACCAGCACAACTTCTTCCAATTACTGGAGCGGCTGCACG GGCTGCATGGCGATGACCTGGAGCCACAGCGCCCGATTGCCTCAGCACGTCAGCGCGTGTGGCTACGAAGCGATGCGTGCCTGTCGTTCCCCGCTTCCGA CATCCGCAAGGCCGAACGTATGATGCAGACGTCGGACGGTCAGCGCTACAACGTCTGCGCTACCTTCTTCGGCCTGCACGGTACCGATTCACCCTTGCCC GGCTTCTATCTCGACCAGGTTGCCTATGAGCAAACTCAGGGCATCGGTATTCGCCCTGCCTTTCTGGACTTTTTCAACCATTACCTGCTCAGCCTCTTGC ATCGCAGCTGGCGCAAGTACCGCTATTACATCCGCTTTCAGGCGCAAGCCAACGATGACTTTTCCCGCTATGTATTCGCCCTCATAGGCTTGAACGACGG GCAATTGCGTGGCAACACCGCCCTGCCCTGGGGCCGACTGCTCAGTTTTGCCGGCGTCATTGCCAGCCGTAGCCGCGCCCCCGGCACGGTCGCAGGGATC ATCGCCCATTGCTTTGATTTGCCCTGCGTACAGATTCGTGAATTCGAAGCGCGTTCGCTCCGGCTTGATCCCCGACAGATGCTCAGCCTGGGCCGGCAGA ACGGCCACCTGGGCAACGACTTTACTGTCGGCACGCGAACGCGCACGCGCAGCAGCAAATTTACCCTTGTCATTTCCCAGCTTACCCAGGTGCGCTTGCG TGAATTCCTGCCCAGTGGCGAGCACTTCGAACGGATACGCGCGCTCATCGACTTTCTCCTGCGCGACGGCTTGGCATATGACCTCGAATTGGTGCTCAAG GACGATGAAGTGCCTGCCTTTTGCCTGAGTCGCAACCACGGCACTCACCTGGGGTGGACCAGCTTCATTGAAATCATTCAAGGGCAATGCGAAGGCATTG TCAGGATCAAGGTACGTTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGTCTCACGTTGACCGTCTGCAACCCTGGGCGCCTGCAGCATGGGGTCAAGCCCAGCCACCAGCTTGATACCCGGGGCGGCACCATTGGCAGCCAGGG GGCTAGCTGGCGATTGAGCGACTGTGACTGCAGCGTTCAACCGATCCACTGCGAAATCCTCTGGACGGAAGGCTGCTTCTGTGTGGTCGATCGCTGCGGA CAAACCTACCTCAACAACAATGACCTGAGCCTCGGAACACTCGCACCCGTGCGTTTGTGCGATGGCGACCACCTGCGTATCGGCGGCTTTCAGGTTCAAA TCCATACCCTCACAGACGGAACCACACAGCATCTGGCACGCCACTGTGTGACGGCGTTGATCAATGAGCACGAACAGGTACTCGATACGTTCATCCGTGA TCTCCCCGCCGAAGTGCCCATCCCCGTCCTGCGCAGCGCGCCGTCCCGGGTGTTCGCCGAACTGAGCCGAACACGGACAACGGGTGAAGGGCTGGACCCT
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| Amino Acid Sequence |
>type VI secretion protein
MAFADRQTTTDLANTLLAEAHQHNFFQLLERLHGLHGDDLEPQRPIASARQRVWLRSDACLSFPASDIRKAERMMQTSDGQRYNVCATFFGLHGTDSPLP GFYLDQVAYEQTQGIGIRPAFLDFFNHYLLSLLHRSWRKYRYYIRFQAQANDDFSRYVFALIGLNDGQLRGNTALPWGRLLSFAGVIASRSRAPGTVAGI IAHCFDLPCVQIREFEARSLRLDPRQMLSLGRQNGHLGNDFTVGTRTRTRSSKFTLVISQLTQVRLREFLPSGEHFERIRALIDFLLRDGLAYDLELVLK DDEVPAFCLSRNHGTHLGWTSFIEIIQGQCEGIVRIKVRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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