Pseudomonas vranovensis DSM 16006, H621_RS0103095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCGGCCTGGCTGCCCTGGTTGTCGAGCACCGAGTAGAAACCCTTGCGCTGCCAGGCCCCGGTGCTTTGGGCATCGTAGAAAAGCCGCGTCGGGGCGA CGGCCTTGCTGCGGTCACCCTGGTACACCGGCACCTTCGAAGCGCCGCGCGAGGCGCCCTCGGCACTGCCCAGGTTGAGCTGGCAGGCAGCGTCGTTGCA GGCGTGGCAGGCCACGCATTTCTCGGTGAAGATCGGTTGGATATCCCGGGTATATGAAATAGCCGGGCTCGATTGAGGGGCTTGCCCTAGCGCTGCGCCA CTGATGAACAGGGCGAAAGCGCCGGCAAGTAAACGATGCACCATGTGCCGAATGTCCTGGGTATTGATAGCTTCACGATTCTACCGGTGCTGGCGGCGCG CCAACATGAATGAAATTCATGTAAACCTTCGACACGTCTAAAAACCGCGCAGCTTTGTTATTATTCCGCAACTTTTGTTTTCGCCCGACCAGGTAGTCCT
|
|
| DNA Sequence for Gene |
>H621_RS0103095
ATGTCTGACCGCAGCGCTCGTTTCCAAGCACTTCAGCAAGCACTCAAAGAGCGCATTCTGATTCTCGATGGCGGCATGGGTACTATGATCCAAAGCTACC GCCTCGAGGAACACGACTATCGTGGCACGCGCTTCGCCGATTGGCCAAGCGACGTCAAAGGCAACAACGACCTGTTGCTGCTCTCGCGCCCGGATGTCAT CGCCGCCATCGAAAAGGCCTATCTTGACGCTGGCGCCGATATCCTCGAAACCAATACCTTCAACGCCACGCAGATTTCCCAGGCCGACTACGGCATGGAG TCGCTGGTGTACGAGCTGAACGTCGAAGGCGCGCGTATCGCCCGTCAGGTCGCCGATGCCAAGACCCTCGAGACGCCGGACAAACCCCGTTTCGTTGCCG GCGTGCTCGGCCCGACCAGCCGCACCTGCTCCATCTCCCCGGATGTCAACGATCCAGGCTTTCGCAACGTCACCTTCGATCTGTTGGTAGAAAACTACAT CGAGGCCACCCGTGGCCTGATCGAGGGCGGCGCCGACCTGATCCTGATCGAGACCATCTTCGACACCCTCAACGCCAAGGCGGCCATCTTTGCCGTGCAG CAGGTGTTCGAGGAAGACGGCCTCGAATTGCCAATCATGATTTCCGGCACCATCACCGATGCCTCCGGCCGCACCCTGTCCGGCCAGACCACCGAGGCTT TCTGGAACTCGGTGCGCCACGCCAACCCGATCTCGGTGGGCCTGAACTGTGCTCTCGGCGCCAAGGACCTGCGTCCGTACCTGGAAGAGCTGTCGACCAA GGCCGGCACCCATGTCTCCGCGCACCCCAACGCCGGCCTGCCGAACGCCTTCGGCGAGTACGACGAAACCCCGGCCGAGATGGCCGTGGTGGTCGAGGAG TTCGCCGCCAGCGGTTTTCTCAACATCATCGGCGGTTGCTGCGGCACCACCCCCGGCCACATCCAGGCGATTGCCGAAGCGGTCGGCAAATACCCACCGC GCGCCATCCCGGACATTCCCAAGGCGTGCCGGCTGTCGGGCCTGGAGCCCTTCACCATCGATCGCAGCTCGCTGTTCGTCAACGTCGGCGAGCGCACCAA CATCACGGGCTCCGCCAAGTTCGCCCGGCTGATCCGCGAAGAGAACTACACCGAAGCCCTGGAAGTGGCGCTGCAACAAGTTGAAGCCGGTGCCCAGGTG ATCGACATCAACATGGACGAAGGGATGCTCGATTCCCAGGCGGCCATGGTCAAGTTCCTCAATTTGATCGCCGGTGAACCCGACATCTCGCGCGTGCCGA TCATGATCGACTCCTCCAAGTGGGAAGTGATCGAAGCGGGCCTCAAGTGCATCCAGGGCAAGGGCATCGTCAACTCGATCTCGATGAAGGAAGGCGTCGA GGCCTTCAAGTATCACGCCAAACTGTGCAAGCGCTATGGCGCCGCCGTGGTGGTGATGGCCTTCGACGAAGTCGGCCAGGCCGACACCGCCGCGCGCAAG CGCGAGATCTGCCAGCGCAGCTACGACATCCTGGTCAATGAGGTGGGCTTCCCGCCTGAAGACATCATCTTCGACCCGAACATCTTCGCCGTGGCCACCG GCATCGAAGAGCACAACAACTATGCCGTGGACTTCATCGAAGCCTGCGCCTACATCCGCGACCACCTGCCCTACGCACTGAGCTCCGGCGGGGTGTCCAA CGTCTCGTTCTCGTTCCGCGGCAACAACCCGGTGCGCGAGGCGATCCACTCGGTGTTCCTCTACCACGCGATCCAGAATGGCTTGACCATGGGTATCGTC AACGCTGGCCAGTTGGAAATCTACGACGAGATCCCTCCCGCGCTGCGCGAGCGGGTCGAGGACGTGGTGCTCAACCGTACCCCGGAAGGCACCGACGCCC TGCTGGCGATTGCCGACGACTACAAGGGCGGCGGCGCGGTCAAGGAAGTCGAGAACGAAGAATGGCGCTCGCTGCCGGTCGACAAACGCCTGGAGCACGC GCTGGTCAAGGGCATTACCGCCTTTATCGTCGAAGACACCGAGGAATGCCGCCAGCAATGCGCGCGGCCCATCGAAGTGATCGAGGGCCCGCTGATGAGC GGCATGAACGTGGTCGGCGACCTGTTCGGCGCCGGCAAGATGTTCCTGCCCCAGGTGGTGAAGTCCGCACGCGTCATGAAGCAGGCCGTTGCCCACCTGA TCCCCTTCATCGAAGCCGAGAAAGGCGACAAGCCCGAAGCCAAGGGCAAGATCCTCATGGCCACGGTCAAGGGTGACGTACACGACATCGGCAAGAACAT TGTCGGCGTGGTGCTGGGCTGTAACGGCTACGACATCGTCGACCTGGGCGTGATGGTGCCGGCCGAGAAGATCCTGCAGACCGCTCGCGAGCAGAAGTGC GACATTATCGGGCTGTCCGGCCTGATCACCCCGTCGCTGGACGAGATGGTCCATGTTGCCCGCGAAATGCAGCGCCAGGATTTCCACCTGCCGTTGATGA TCGGTGGCGCGACCACCTCCAAGGCGCATACCGCGGTGAAAATCGAGCCCAAGTACAGCAACGATGCGGTGGTGTATGTGACCGACGCCTCGCGTGCGGT GGGTGTGGCCACGCAGCTGCTGTCCAAGGAACTCAAGCCGGGCTTTGTCGAGAAGACTCGCCTGGACTACATCGACGTGCGCGAACGCACCGCCAACCGC AGTGCCCGTACCGAGCGCCTGAGCTACGCGCAGTCGATTGCCGCCAAGCCGAAGTACGACTGGGCCGGCTACCAGCCGGCAGTGCCGAGTTTCACCGGCG TCAAGGTGCTGGAGAACATCGACCTCAAGGTATTGGCCGAGTACATCGACTGGACGCCGTTCTTTATCTCCTGGGACCTGGCGGGCAAGTACCCGCGCAT CCTCACCGACGAAGTGGTCGGCGAGGCAGCCACCGCCTTGTTCAAAGACGCCCAGGAGATGCTCGCCAAGCTGATCGACGAGAAACTGATCAGCGCCCGT GCCGTGTTCGGCTTCTGGCCGGCCAACCAGGTCAACCATGACGATATCGAAGTCTATGGCGCCGACGGCCAGCCGCTGGCCCAGCTTCATCACCTGCGCC AGCAGACCATCAAGCCGGACAGCAAGCCCAACTTCTCCCTGGCCGACTTTGTCGCACCCAAGGAAACCGGCATCACCGACTACGTGGGTGGCTTTATCAC CACCGCCGGCATCGGCGCCGAAGAAGTGGCCAAGGCCTATCAGGACAAGGGCGACGACTACAATTCGATCATGGTCAAGGCCCTGGCCGACCGCCTGGCC GAAGCCTGTGCCGAGTGGCTGCACGAGCAGGTGCGTAAAGACTACTGGGGCTACGCCAAGGACGAGCACCTGGACAACGAAGCACTGATCAAGGAGCAGT ACTCGGGCATCCGCCCTGCCCCGGGCTACCCGGCCTGTCCTGACCACACCGAGAAAGAAACCCTGTTCCGCCTGCTCGATGGCACCGCCATCGGCGAGAC CGGCCCCAGCGGTGTGTTCCTTACCGAACACTTCGCCATGTTCCCCGCGGCGGCGGTCAGTGGCTGGTACTTCGCCCACCCACAGGCGCAGTACTTTGCC GTGGGCAAGGTCGACAAGGACCAGGTGCAGAGCTACACCGCGCGCAAGGGCCAGGACCTGAACGTGAGTGAGCGCTGGCTGGCGCCAAATCTGGGGTACG AGAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AATCGCGGGGTAAGCCCGCTCCCACCGGTCAAGGTAGGAGCGGGCTTGCCCCGCGATCCGGTCTAGACTGAGAAAACTCCTACACCAAGGACTTACTCAT GGACGACCCAGCCCAAGGCAAGCCACCCACCTTCTGGCAGATGCTGCAAAGCATCCTGGCAGCGGCGTTTGGCGTTCAAAGCGGCAAGAACCGCGCCCGC GACTTCAACCACGGCAAGGCCAGCCACTTCATCGCGCTGGGCACCGTGTTCACCTTGATTTTCATTCTGGTCTTGGTGGGGCTGGTGCAACTGGCCATGC ACCTTACTGCCCGCTGAAATGCAATCCGCCCGCAGATGTCCATTCTGCGGGCGGTTCATGGTTACCCATCGCGTGATGTCACTGGTGGCTGACCCAGTAC ACGGCGGTCACGACTACCAGGATGATCAGACAGAGTATCGCCCAGGCATCGACACTGCTGTCACTCTTACCCGCTTTGGTCGAGTTTCCCATTGCATCGC
|
|
| Amino Acid Sequence |
>methionine synthase
MSDRSARFQALQQALKERILILDGGMGTMIQSYRLEEHDYRGTRFADWPSDVKGNNDLLLLSRPDVIAAIEKAYLDAGADILETNTFNATQISQADYGME SLVYELNVEGARIARQVADAKTLETPDKPRFVAGVLGPTSRTCSISPDVNDPGFRNVTFDLLVENYIEATRGLIEGGADLILIETIFDTLNAKAAIFAVQ QVFEEDGLELPIMISGTITDASGRTLSGQTTEAFWNSVRHANPISVGLNCALGAKDLRPYLEELSTKAGTHVSAHPNAGLPNAFGEYDETPAEMAVVVEE FAASGFLNIIGGCCGTTPGHIQAIAEAVGKYPPRAIPDIPKACRLSGLEPFTIDRSSLFVNVGERTNITGSAKFARLIREENYTEALEVALQQVEAGAQV IDINMDEGMLDSQAAMVKFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEAFKYHAKLCKRYGAAVVVMAFDEVGQADTAARK REICQRSYDILVNEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEACAYIRDHLPYALSSGGVSNVSFSFRGNNPVREAIHSVFLYHAIQNGLTMGIV NAGQLEIYDEIPPALRERVEDVVLNRTPEGTDALLAIADDYKGGGAVKEVENEEWRSLPVDKRLEHALVKGITAFIVEDTEECRQQCARPIEVIEGPLMS GMNVVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIEAEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQTAREQKC DIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTSKAHTAVKIEPKYSNDAVVYVTDASRAVGVATQLLSKELKPGFVEKTRLDYIDVRERTANR SARTERLSYAQSIAAKPKYDWAGYQPAVPSFTGVKVLENIDLKVLAEYIDWTPFFISWDLAGKYPRILTDEVVGEAATALFKDAQEMLAKLIDEKLISAR AVFGFWPANQVNHDDIEVYGADGQPLAQLHHLRQQTIKPDSKPNFSLADFVAPKETGITDYVGGFITTAGIGAEEVAKAYQDKGDDYNSIMVKALADRLA EACAEWLHEQVRKDYWGYAKDEHLDNEALIKEQYSGIRPAPGYPACPDHTEKETLFRLLDGTAIGETGPSGVFLTEHFAMFPAAAVSGWYFAHPQAQYFA VGKVDKDQVQSYTARKGQDLNVSERWLAPNLGYEN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|