Pseudomonas vranovensis DSM 16006, H621_RS0100450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas vranovensis DSM 16006 H621DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGAGAAAGCGGTGCAGGTCAGCGTGCCGGGTGGTGGCTCCGCGGTGCGTGTAGAGGCAGGCCAGTCCGTTGATTTCGGCGGCGGCGCATTGGGTGGGCT GCGCCACAACGATGCATCGGTGGGGGCCTGGCAACAGGGCAGCATCATCGCCATCGACCGCCCCCTGGCAGAACTGTTGGCCGACCTGTCGCGCTACCGC AGTGGCATCTTGCGCTGTGATCCACGCATTGCCCGATTGAAGGTGTCCGGCGCGTTTCCCATCGATGACACCGACAGGGCACTGGCGGCGCTGGAGAGCG GATTTTCACTACGGGTTACCCGGTACAGCCGCTATTGGGCCAGTGTTTCAGGCCATGATGTGCATTGACAGGGCGCTTGCTGCGCAGCCTGGTGGCAGCG GCTACAGCACCTAATTTTTTTGCATTTGCACTTTTGCTGCGCATCGTTCGGCTCATCCCTCAATGAGTTTCTATTGATCGATTGTTGGGGGAGGGTACGC
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| DNA Sequence for Gene |
>H621_RS0100450
ATGTCCGGGGTGTTCAAAAAAGGTCGTCTGGGGAGCGCAGTAGCGGTCGGGCTGCTGGCGGCAACGGCGGCGGGTGGATGGTCGACGGCAACGCTGGCAG CGCAGGTGCCGGCGCAGCAGCGGGTGCAAACTTTCGACATCGCCGGTGGCAGCCTGACCGAGGTGCTCAGCCATTTCGCCAGTGCCGCAGGCGCAGCGAT TTCCTTCGATGCGCGCCAGACCCAGGGCTTGCACTCGCCGGGGCTCAAAGGCGCGTTTGGGGTCAGCGAAGGCTTCGCGAGGATACTGGCCGGGAGCGGG CTGCAAGCTGTCCCCCAGGCCAACGGCACCTATGTACTGTTGCCAGTGGCAACGAGCGGTTCGGCACTGGAGCTGGGTGTGACCAACGTCGATGGCCAAA CGCTGGGCGCCACCACGGAGAACAGCGGCTCGTACACCACCGGTGCCGTGACCATCGGCAAGGGCGAGCACAGCCTCAAGGAAACGCCGCAATCGGTCAC GGTGATGACCCGCAAGCTGCTCGATGACCAGAACCTCACCACCATCGACCAGGTGATGGAGAAGACCCCGGGCATCACCGTGTACGACTCGACCATGGGC GGTAAATACTTCTATTCGCGCGGCTTTCGCATGTCGGGGCAGTATCAGTACGACGGCGTGCCGCTGGACATGGGCAACCTCTATGTCCAGGCCGACAGCT TCAGTGGCGACATGGCGTACTACGATCGGGTCGAAGTGCTGCGCGGTGCTGCAGGCATGATGAAAGGCGCCGGGGGCACCGCCGGCGGGGTCAACTTCGT GCGCAAACGCGGCCAGGCGGCCGCGCATACCGACATCACGCTGTCCGCTGGCACGTGGGACAACTATCGCGCGCAGGTCGATACCGGTGGCCCGCTCAAC AGCACCGGCACGCTGCGTGGCCGGGCGGTCGCCGCCGAGCAGAGCCGGCACTATTTCATCGACGACGCCAGTCGCAAGGACCAGGTCTACTACGGTGCCC TCGACGCTGACCTGAACCCGGACACCACGGTCGGGCTGGGTATTGCCTATGAGGATGTCGATGCCAACCCATGCTGGGGTGGGCTGCCGCGCTACCGCGA CCGCAGCGACCTGAACCTCAGCCGCTCGACCTGCCTGGACCCTTCGTGGAACACCTGGCGCAGCAAGCGCACCACCTTCTTTGGTGACCTCAGGCACCAG ATCAATGACGACTGGGCCCTGAAGGTTGCCGGCGTCTATTCAAAAAACACCCAGGACATCAAGTACGCATTCGCCTCCGGCGCCGTCACACCCGGCGTGG ATACCACCGGCATGCTGGGCAGCCTGTACAACTACGACCAGGTGGATTACGGCCTCGACGCCTACGTGGATGGCAGATTCGAGGGCTTTGGCCAGCAGCA TGAGCTGGTGGTGGGCCTCAATGCCAGCCGGGCGAAAAAGGACGATTTCTACTCGGTGGCGTTTCTGCCGCAGCGCCAGAATGTGTTCAACCCCGACAAA CACATTCCTGAGCCGAGCGACAGCTACTTCATCGACAATTCATCCCGTGGCGGGCCGGTCAATTCGGTGACCAAGCAAAAAGGCGTGTACTCGACCTTGC GCCTGAAACTGGCGGATCCACTGACGTTCGTCGCCGGTGGCCGGGTGAGCTGGTATAGCTCCGACACCGATTACGACTTCATCAACACCGGCACTTCGCA GCACGCCAGCACCACGGAGACCGGCCAGGTCACGCCCTTCGCCGGCCTGCTGCTGGACCTGAACGAGAACCTCACGGCCTATGCCAGTTATGCAGAGATC TTCACCCCCCAAGGCAACTACCGTTCCGAGGACGGTTCGACGCTCAAGCCACTGGTGGGCCAGAGTTATGAACTGGGGATCAAGGGCGCCTGGTTCGACG GTCGCCTGAACAGCGCCTTCAACCTGTTCCGCACGATCCAGAAAGACCAGGCGCAGACCGACTACAACTCATCCTGCCCGTCGTCCGATGGCTATTGCTA TGTCAATGCCGGCAAGGTTCGCGCCCAGGGTTTCGAGGCCGAGATCAGCGGTGAAGTCATCGAGCGCCTGCAACTGCTCGCCGGTTACACCTACACCCAG ACCAAAACCCTCGAAGACATCGACACCAGCCTGGATGGCGCTGCCTTCAACACCTATGTGCCGCGGCACATGCTGCGCTTGTGGGGAGACTATGCACTGG GCGGCTCGTTGGAGCGGTTCACCCTCGGTGCGGGCGTGAACGCACAGAGTGACAACTTCCGGGTTTCACCTTCCAGTAACGAAAAAATCAGCCAGTCGGG GTATGCGATCTGGAATGGCCGCATCGGCTACCGCATCGATGACACCTGGTCGGTTGCGCTCAATGGCAACAACCTGTTCGACAAACGCTACTACGCCACC ATCGGTACCGAGGCGTTCGGCAACTACTATGGCGAACCGCGCAACTTCATGGTGTCGGTCAAGGCGAGTTTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGTGACCTTGTGGGAGCCGGGCTTGCCGGCGATCGACCGCTCAGCGGTCGCATTCCACACGCCACGTGATCGGCATGCCGCCCTGGTCTCATCGCTGGC ACGCTAGCGCCCACGGGGTACTGTGCGCCAGCTTCTCAACCGGCAGCAGATCGCTGCCGCTTTACCCGGTACATATCGTCATCGGCATGGCTGAGCAATG TATCGGCATCTTCCCCGTCCTGGGGGTAGCAGGCCACGCCGACACTGCAGGACGGCATTCTTATGCCGTCAAACCCTTCACCCAGCGGCTCGGCCATCAC TGCAACGATACGCGCCACGGCCTCATGCACCACATCCGGAGACTGGACATCGGTCAACAGTATCGTGAACTCGTCACCACCCATCCGGGCCACGGTGTCG GTCTCCCGTACACAGTGCTCCAGTCGCCGGGCAATGGCGCAAAGCACCCGGTCGCCCGCCGCATGGCCGTGGCCATCGTTAATGCCCTTGAAGTCATTGA
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| Amino Acid Sequence |
>TonB-dependent receptor
MSGVFKKGRLGSAVAVGLLAATAAGGWSTATLAAQVPAQQRVQTFDIAGGSLTEVLSHFASAAGAAISFDARQTQGLHSPGLKGAFGVSEGFARILAGSG LQAVPQANGTYVLLPVATSGSALELGVTNVDGQTLGATTENSGSYTTGAVTIGKGEHSLKETPQSVTVMTRKLLDDQNLTTIDQVMEKTPGITVYDSTMG GKYFYSRGFRMSGQYQYDGVPLDMGNLYVQADSFSGDMAYYDRVEVLRGAAGMMKGAGGTAGGVNFVRKRGQAAAHTDITLSAGTWDNYRAQVDTGGPLN STGTLRGRAVAAEQSRHYFIDDASRKDQVYYGALDADLNPDTTVGLGIAYEDVDANPCWGGLPRYRDRSDLNLSRSTCLDPSWNTWRSKRTTFFGDLRHQ INDDWALKVAGVYSKNTQDIKYAFASGAVTPGVDTTGMLGSLYNYDQVDYGLDAYVDGRFEGFGQQHELVVGLNASRAKKDDFYSVAFLPQRQNVFNPDK HIPEPSDSYFIDNSSRGGPVNSVTKQKGVYSTLRLKLADPLTFVAGGRVSWYSSDTDYDFINTGTSQHASTTETGQVTPFAGLLLDLNENLTAYASYAEI FTPQGNYRSEDGSTLKPLVGQSYELGIKGAWFDGRLNSAFNLFRTIQKDQAQTDYNSSCPSSDGYCYVNAGKVRAQGFEAEISGEVIERLQLLAGYTYTQ TKTLEDIDTSLDGAAFNTYVPRHMLRLWGDYALGGSLERFTLGAGVNAQSDNFRVSPSSNEKISQSGYAIWNGRIGYRIDDTWSVALNGNNLFDKRYYAT IGTEAFGNYYGEPRNFMVSVKASF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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