Strain | Pseudomonas resinovorans DSM 21078 G559DRAFT_scaffold00033.33_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCCGCCTCCGCCGGCCGAATCCCTGCACACGCTCTACCGCGATCACCATGGTTGGCTGACGGGCTGGCTGCGCCGTCGCCTGGGCTGCCCACAGAATGCC GCTGACCTCGCCCAGGACACCTTCCTGCGCGTCCTGCTGGCACGGGAAAAACCGGTGATCCTGGAGCCCCGCGCCTTCCTCACCACAGTGGCCAAACGCG TATTGGCCAACCACTACCGCCGCCAGGACATCGAGCGCGCCTACCTCGAAGCCCTCGCCGCGCAACCGGAAGCCCTGGCCCCGAGCGAAGAGGAACGCGC CATCATCCTGGAAACCCTGGTGGAGCTGGACCGCCTGCTGGACGGCCTGCCAGCCGTGGTGAAGAAGGTATTCCTGCTGGCCCAGGTGGACGGCATGACC TACGCCGAAATCGCCGACCAGCTCGACATTTCCCTCTCCACTGTCAAACGCCACATGGTCAAGGCTGCCCAGCGCTGTTACTTCGCGGAGAGCTTCTGAG
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DNA Sequence for Gene |
>G559_RS0121795
ATGAACCTCTCTGCCGTGGACCGCAGCCGAATCGCCCCAGCTGTCGCCGAGCAGGCCGTGGAATGGCTGGTGGAGCTGCAGGGTGGCGATATCAGCGACC AGCGCCGGCAGGCCTGGCAGGACTGGCGCGCCGCCGACGCCGAACATGAACGCGCCTGGCAGCGTATCGAGGCGATCAACCTTGGCCTGCGCGGCCTGGA CACACCGCTGACCCTGGCAGCCTTGGGCGCCCCCGCCCGCCGCAGCCGTCGCGAGGCCCTGAAGCTGCTGGTGCTCTGCGCCCTGGTCGGCGGCGGCGCC ATCAGCCTGCGCGACAGCGAATCCCTGCTGGCCCTGCGCAGTGATGAGGCCACCGGTGTCGGCGAACGCCGCGCGCTCAAACTGGCCGATGGCTCGCGCC TGGAGCTGAACACCGCCAGCGCCGTGGATATCCGCTTCGATGCCAGACAACGACTGATCGAAATGCGTCAGGGGGAAATCCTCGTCGATGCCGTCAGCGA CTCACGTCCGCTGCGCATCCACACGCCTCAAGGGCTGATCGAAAGCCGTGGTGGCCGCCTCAATGTGCGCATCCTCGAACGCAGCAGTCGGGTCAGCCTG TTCGATGGCAGCGCCGATCTGCTGGCCGACGGTCAGAGCCAGTCGCTGCTGCCCGGCCAGCAGGCCAACCTCTCGCCGACACGCATCGGCACACCGAGAA GCGCCAGCGAAGACAACCTGGCCTGGACCCAGGGCATGCTGGTCGCCAGCCATATGCGCCTGGACGACTTCCTCGCCGAACTGGGCCGCTACCGCCGCGG CCACCTTGGCTGCGACCCACAGGTGGCCGGGCTGCTGATCTCCGGCAGTTACCCGCTGGATAACACCGAACGCATTATCGCCATGTTGCCCAAGGCGCTG CCGGTGGAGGTGCACAGCCTGACCCGTTACTGGGTCAAGGTGCATCCGCGCGCCACGGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CACCCGGAGGCTCGGAACGATGGGTATCGCTGCGCTCCACGCCATCCTACGACTCGCCCCGTGGGCAGGAGGGCGTTGAGCCCAAGACGGCACCCATAAC TTTTTTTTCGAAAGCTGAGCCTTTTTTTCGATCTCGCGTGACAAGGCAGGCAGAGACCCTTCCTTTTTACCGACGAGACGCCGCCATGCAGTCCCCGCAA CGCCTTCGTACCTTCCCCCGCACGCCCCTTGCCCGCGCCCTGATGCTGGGCTTGGGCCTGGCCGCCGTCCTGCCCGCGCCGACCTTTGCCGCCAGCCTGG AAATCAGCGCCGAAAGCCAGCGCCAGGCGTTCGACATTCCCGCAGGCCCGCTGGAGTCGGCGCTCAACCAATTCGGCCGCGAAGCCGGCGTGCTGCTGTC CTTCAGCCCCGAGCTGACCGCGGGCCGCCAGACCCAGGGCCTGCACGGTCAGTACGGCGTCGACGAGGGCCTGCGCCAACTGCTGGCCGGTAGCGGCCTG
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Amino Acid Sequence |
>membrane protein
MNLSAVDRSRIAPAVAEQAVEWLVELQGGDISDQRRQAWQDWRAADAEHERAWQRIEAINLGLRGLDTPLTLAALGAPARRSRREALKLLVLCALVGGGA ISLRDSESLLALRSDEATGVGERRALKLADGSRLELNTASAVDIRFDARQRLIEMRQGEILVDAVSDSRPLRIHTPQGLIESRGGRLNVRILERSSRVSL FDGSADLLADGQSQSLLPGQQANLSPTRIGTPRSASEDNLAWTQGMLVASHMRLDDFLAELGRYRRGHLGCDPQVAGLLISGSYPLDNTERIIAMLPKAL PVEVHSLTRYWVKVHPRATG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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