Pseudomonas resinovorans DSM 21078, G559_RS0108345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas resinovorans DSM 21078 G559DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGTGATGCTGAAGGTGCTCTATGGATTGAAGAACTTCGAAGGCAAGTCGAAGTTCAAGACATGGCTATATAGCATCACCTACAACGAGTGCATTACCCA ATATCGGAAAGAGCGCCGAAAGCGACGCTTGCTCGATGCGCTGAGTCTGGATCCTCTTGAGGAGGCTTCGGAAGAGAAAGCACCCAAAGTCGAGGAGCGG GGAGGCCTGGAGCGATGGCTGGTACATGTAAATCCCATTGACAGGGAAATTCTTGTGCTACGTTTTGTCGCAGAGCTGGAGTTTCAGGAGATCGCTGACA TTATGCATATGGGCTTGAGCGCCACGAAAATGCGCTACAAGCGTGCACTGGATCGACTGCGCGAAAAATTCTCGGGCCTTTCCGAAACTTAGTTTGGGAA AAATTATCTCTTAAGGGCCGGTATGTTCTGCTAGAATTGCCGACCAAGTTGTCTGGAGATTGTTCGACAACTTCTGACCACCAATGATGGGGATTTACGG
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| DNA Sequence for Gene |
>G559_RS0108345
ATGAAACTGAAAAACACCTTAGGCGTAGCCGTTGGCTCTCTTGTTGCCGCTCTCTCGATGAACGCGCTGGCTCAGGGCCAAGGCGCAGTTGAGGTGGAAG CTTTCGGTAAGCGTTACTTCACCGACAGTTCTCGCAGTCTCGAGGACGGCAACCTTTACGGCGGCTCGGTAGGCTACTACCTGACCGACGACGTTTCCCT GGCTCTGTCGTACGGCGAGTACCACGACATGACCTCCGACGATGCCTTCGGCGTCGACGGCCACAAAGACATCAAGGGCAGCCTGGCTTCCCTCGACGCT GTTTATCACTTCGGTACTCCGGGTGTTGGTCTGCGTCCCTACGTTTCCGGCGGCTTTGCTCACCAGAGCATCAGCAACATTCCGGATCGTTCCGGTCGTG ATCACAGCACCTTCGCCAACGTTGGCACCGGTCTGAAGTACTACTTCACCGAGAACTTCTTCGCCAAGGCGAGCCTGGACGGCATGTACAACCTGGACGC CCAGGAATCCGAGTGGATGGCTGGCGTAGGCGTTGGCGTGAACTTCGGTGGTTCCACCAAGCAAGAGCCGGCTCCGGCTCCGGTTGCCGAAGTGTGCGCT GACAGCGACAACGACGGTGTTTGCGACAACGTCGACAAGTGCCCGGACACCCCGGCCAACGTTACCGTTGACGCTGATGGCTGCCCGGCTGTTGCCGAAG TCGTACGCGTTGAGCTGGACGTGAAGTTCGACTTCGACAAGGCCAAGGTGAAAGAAGAAAGCTACGGTGACATCAAGAACCTGGCTGACTTCATGAACCA GTACCCGGCTACCACCACCACTGTTGAAGGCCACACCGACTCCGTCGGCACCGACGCCTACAACCAGAAGCTGTCCGAGCGTCGTGCTGACGCCGTACGC GACGTGCTGGTTGACCAGTACGGTGTAGGTTCCGAGCGCGTGAACGCTGTTGGCTACGGCGAAACCCGCCCGGTTGCCGACAACGCCACCGCTGACGGCC GCGCTGTTAACCGCCGCGTAGAAGCTGAAGTGGAAGCCCAGGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGGTTTGAGCCTCAGAAAAACCCGGCCTCGGCCGGGTTTTTCTTTGCCCGAAGAAAGTGTCGTGCGCTGATCCGGATGAAAAAAAGCCCGGCATGGCCG GGCAAACACGACTTCGCAGGAGCGAAGAGAGATTTAGGCGCTTCGTGCCATCGGGAGGACAGCTTCGGCTGCGGCAACCTCGCCGATGACCAGGATGGCC GGGCTTTTCAGTTCGAAGGCCTGGGCGTCTGTCTGCATCTGCCCAAGGGTGCTGCGGCATTCGCGTTGGTGGGGCAGGGAGGCATTCTCGATCATGGCCA CGGGCATGGCACCGGACATGCCGCCCGCCAGAAGCCCCTCGCGAATATCGGCAAGCTTGGCGACGCCCATGTAAACCACCAGCGTCGTGCCGGACTGCGC GAGAGCCCCCCAATTGAGGTTGCTGTCGTCCTGGGTGTGGGCGGTGACCAGGGTGACACCACGGCTGATTCCGCGCAGGGTGAGGGATATGCCGCAGTTG
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| Amino Acid Sequence |
>porin
MKLKNTLGVAVGSLVAALSMNALAQGQGAVEVEAFGKRYFTDSSRSLEDGNLYGGSVGYYLTDDVSLALSYGEYHDMTSDDAFGVDGHKDIKGSLASLDA VYHFGTPGVGLRPYVSGGFAHQSISNIPDRSGRDHSTFANVGTGLKYYFTENFFAKASLDGMYNLDAQESEWMAGVGVGVNFGGSTKQEPAPAPVAEVCA DSDNDGVCDNVDKCPDTPANVTVDADGCPAVAEVVRVELDVKFDFDKAKVKEESYGDIKNLADFMNQYPATTTTVEGHTDSVGTDAYNQKLSERRADAVR DVLVDQYGVGSERVNAVGYGETRPVADNATADGRAVNRRVEAEVEAQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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