Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0120860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00010.10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGCAACAACCTGCGGCAGAACTCCCGCGCACTGGGCCTGGGCCTGCGCCGGCTGGGCCTGTTCACCGGCATCGTGCTGTTCGACCAGCGGGTGTCGAT GTGGACCAGCCTGCTGGGCCTGACCGTAGCGGTGATCGCCAGCCTCAAGTTCGGCCTGGCCTTCTTGCTGGTGTACCTGCTGTGGATCGGCATCACCCGG CTGATCCTCACCATCATGCTGCTGTGCTCAGGCCACAGCGTGGGCCCGGCCTACCCGCTGATCCTCTATTACAACCAGATCATCGGCGCGCTGATGAAGA TCTACGTGTTCTTCCGCCTCGACAAGCAGTCGTGGACGCGCCAGCCCACTGCCCTCAAGCGTGACCTCGCCAGCTTTCAACAATGGTTCAACACCTGGTC CTCGCGGGCCATGACCTTCTCGGCCGCCAGCATCTTCGTCGCTGTGCTGTTCATGGTCGTGTGACCCAACCCGGATCGGAACTTACAGGAACAGAGCCCC
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| DNA Sequence for Gene |
>H619_RS0120860
ATGAATACCGCCGTGAATGTCAACGTCGTGCATGAGTCCGAAGCCCAGCGCCAGCATGCCCGGGTCCGCATCCCTGCCAAACTGCGTTTCCTCGATGCCC AGCGCCAGCCCCACGAAGTCAAGGTCGAGGACCTGTCCGCGGGTGGCCTGAGCTTCCATTCCCAGCAGCCGCTGGCCGTGGGCGAGGTGCTGCGCGGGCG GCTGCAGTTCACGGTCGACAACCTCGGCTTGTCGATGGACATCGAGTTCCAGGTACGTGCCTACAACGCAGGCGACGGCCGCACCGGCGCGCAGTTCCAG AACCTGGAACCCCGCGATATCGCCACCTTGCGCCACCTCATCACCAGCCACCTGTCCGGTGAGCTGATCACCCTGGGCGACGTGCTCAGCACCCTGCAAC GTGACAACTTCACAAAGGCGCGCAAGCAGAAGGACAGCGGCAGCGGCCTGACCCCTTTTGGCCGCTTCAAGGCAGTCAGTGTGACCCTGGGTGTGTTCGT GGTGGGCATCGCCGCCTTTGGTTTTGTCGCCAAGTCGCTGTACGGCATGTACTTCGTCAGCCGCGCCGAAGCCGGCGTGGTCGCCGTGCCCGCCACCACC ATCACCATGCCCCGTGACGGCACCGTCAACAGCCTAGTGCAGGCCGGCGGGCAGATCGGCAAGGGTGCGCCCCTGGCCAGCTTCACCACCAGCATGCTGG ACATGCTCAAGGGCAGCCTGGACGACGCACAGCTGGAACCGGCCAAGATCGAAGAGCTGTTCGGCAAGCAGCTGTCCGGTACCCTCACCAGCCCCTGCGA CTGTGTGGTCGCCCGCCAGTGGGTGGACGACGGCCAGTACGCCGCCAAGGGCCAGCCGATCTTCCAGCTGATCCCGCGCACCACCACCCCGACCGTGGAA GCACGCTTCAGCTACCGCCAGTTCGACGAGGTGAAGCCAGGCACCCGGGTCAACTTCCAGGTCGCCGGTGAAGACCAGGTGCGTACTGGCCAGATCGTCG GCAGCAGCAGCCTGAACAGCGAAGACCTGGCTGCCGACATCCGCGTGCAGATCAAACCCGACAGCGGCTTGCCGGCAGAGCTGGCCGGGCGCCCGGTGGC GGTCAGCAGCGACCGTGGGCCCTCGTTGAACGGGCTGTTCGACAGCGCTCAAGCCCGTGGGTTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGGAACGCGTGATGAACTGCATGCCGCCGTTGCAAGGGCTGTGCCCTCGCCCCTTCACCTGGTGCACGCTCGCCCTAGCCGTGACCTTGGCCGGCTGCG CGGGCCTGCCCGACCAGCGCCTGGCCAACGAAGCCCTCAAGCGCGGGGACACCGCACTGGCCGAGCGCAATTACCAGGCCCTGGCAAACCTAGGCTACAG CGATGCCCAGGTGGGGCTGGCCGACATCAAGGTGGCCACCGGCAACCCGGCGCAACTCGAACAGGCCGAGGCGACCTACCGCGCTGCCGCAGCCACCTCG CCCCGTGCCCAGGCGCGCCTGGGCCGCCTGCTGGTGGCAAAGCCCGGCAGCACCCAGGCCGAACGCGAAGAGGCGCAAACCCTGCTCAAGCTCGCCGCCC GCCAGGGCCAGGGCAACACCCTGATCCCGCTGGCGATGCTGTACCTGGTGTACCCGCAAAGCTTCCCCGGTATCAATGCGCAGAAACAGATCGACCAGTG
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| Amino Acid Sequence |
>hemolysin D
MNTAVNVNVVHESEAQRQHARVRIPAKLRFLDAQRQPHEVKVEDLSAGGLSFHSQQPLAVGEVLRGRLQFTVDNLGLSMDIEFQVRAYNAGDGRTGAQFQ NLEPRDIATLRHLITSHLSGELITLGDVLSTLQRDNFTKARKQKDSGSGLTPFGRFKAVSVTLGVFVVGIAAFGFVAKSLYGMYFVSRAEAGVVAVPATT ITMPRDGTVNSLVQAGGQIGKGAPLASFTTSMLDMLKGSLDDAQLEPAKIEELFGKQLSGTLTSPCDCVVARQWVDDGQYAAKGQPIFQLIPRTTTPTVE ARFSYRQFDEVKPGTRVNFQVAGEDQVRTGQIVGSSSLNSEDLAADIRVQIKPDSGLPAELAGRPVAVSSDRGPSLNGLFDSAQARGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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