Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0119790 (relA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00007.7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCCCTGCCACTGGCCCGCCAGGCGCGTGAGGTGGTAGCAGTTGAAGGCGTGCAGGCCATGGTCGACCGGGCCGCCGCCAACGCCCGAAGCAACAATGT GCATAACGCACGGTTTTTTCAGGCCGATTTATCGCAGCCTTTGGCCGGCTCCGGATGGGCCGCCGAAGGCTTTTCTGCGGTACTCTTGGACCCACCGCGT GACGGTGCATTCGAGGTGGTGCAAGGCATCGCCCGCCTCAAGGCCAAACGGCTGGTCTATGTATCGTGCAACCCGGCAACGTTGGCGCGAGACGCGCAGG TGCTGGTTGGGCAGGGGTACCGGTTAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCACATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTA GCATGCTGCTGGCCCCTTGGTACGGCTTTCAAGGATTGGCAGCCGTGCGGTGATTGCCAGCGCATCCGTGGGGTGCGCTGTATGGAAAGGTAGAACAAAG
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| DNA Sequence for Gene |
>H619_RS0119790
|relA
ATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACCGACGGCAGTATCAATCTCGAAGGCTGGTTGGACCACGTGGTAAGCGTCGATTCGGCACTGGACC GCGCTGCGCTGAAAGACGCCTGCGAGTTTGCCCTGGACGTCGAGAAGAAGGGCAACCCTGCCAAGCATTCCTGGGCAGACGGTACCTCCAGCTTTCAGGC CGGGCTTGAAATCGCCGAGATCCTCGCGGACCTCAAGCTCGACCAGGACTCCCTGGTGGCAGCGGTCATCTACCGGTCGGTACGCGAAGGCAAGGTGACC TTGGCCGAGGTCAGCCAGCGCTTCGGCCCGGTGGTTTCCAAGCTGATCGACGGCGTGCTGCGCATGGCTGCCATCAGCGCCAGCCTCAGCCCCCGGCAGT CGCTGGTGCTGGGCTCCCAGGCGCAGGTCGAGAACCTGCGCAAGATGCTCGTGGCCATGGTCGACGATGTGCGCGTGGCGCTGATCAAGCTGGCCGAGCG CACCTGCGCGATACGTGCAGTCAAGGGCGCCGACGACGAGAAGCGCCTGCGGGTTGCCCGCGAGGTGTTCGACATCTATGCCCCCCTGGCACACCGCCTG GGCATCGGCCACATCAAGTGGGAACTCGAGGACCTGTCCTTCCGTTATCTCGAGCCCGATCAATACAAGCAGATCGCCAAGCTGCTGCACGAGCGTCGGC TGGACCGCGAGCGCTTCATCAGTGATGTGATGAACCAGTTGCAGAACGAGCTGCTGGCCACGGGCGTGAACGCCGATATCAGCGGCCGGGCGAAACACAT CTATTCCATCTGGCGCAAAATGCAGCGCAAGGGCCTCGAGTTCAGCCAGATCTACGACGTGCGTGCCGTACGTGTACTGGTGCCGGAGGTTCGTGACTGC TACACCGCGCTGGGTATCGTGCATACGTTGTGGCGGCACATCCCCAAGGAGTTCGACGACTACATCGCCAACCCCAAGGAAAACGGCTACCGCTCGCTGC ATACGGCAGTAATCGGCCCAGAGGGCAAGGTCCTCGAGGTCCAGATCCGCACCCACGGTATGCACGAAGAGGCTGAGCTGGGGGTGTGCGCCCACTGGCG TTACAAGGGCACCGACGTAAAGTCTGGCTCCAACCATTACGAAGAAAAGATTTCCTGGTTGCGCCAGGTGCTGGAGTGGCACGAAGAGCTGGGCGATATC GGCGGCCTGGCCGAACAGCTGCGGGTGGATATCGAGCCGGACCGGGTCTACGTGTTCACCCCGGACGGCCACGCCATCGACCTGCCCAAAGGCGCCACGC CGCTGGACTTCGCCTACCGGGTGCACACCGAGATCGGCCACAACTGCCGGGGTGCCAAGATCAACGGGCGCATCGTGCCGCTCAACTACAGCCTGCAGAC CGGCGAGCAAGTCGAGATCATCACCAGCAAGCACGGTAACCCGAGCCGCGACTGGCTGAACTCGAACCTGGGCTACGTGACCACTTCTCGGGCGCGGGCA AAGATCGTGCACTGGTTCAAGCTGCAGGCACGTGACCAGAACGTCGCCGCCGGCAAGACCCTGCTCGAGCGTGAGCTAAGCCGGTTGGGCCTGCCTCAGG TAGACTTCGAGCGCCTGGCCGACAAGACCAACGTCAAGACGGCAGAAGACATGTTCGCGGCACTGGGCGCCGGCGACCTGCGCCTGGCGCACCTGGTCAA TGCTGCCCAGCAACTGCTCGAGCCCGAGCGCATCGAGCAGATCGAACTGGTCCCGCGCAAACCCAGCGGGCCGCGCGGTGGCAAGCGTGGCGATATCCAG ATCCAAGGCGTCGGCAACCTGCTGACGCAAATGGCAGGCTGCTGCCAGCCGCTGCCGGGCGATGCCATCGTTGGCTACATCACCCAGGGCCGTGGCGTGA GCATCCACCGCCAGGACTGTGCATCGGTGCTGCAACTGGCGGGCAAGGAGCCCGAGCGCATGATCCAGGTGAGCTGGGGGCCGATCCCGGTGCAAACCTA CCCGGTGGACATCGTCATCCGCGCCTATGACCGCCCGGGCCTGCTGCGCGATGTTTCGCAGGTGCTGCTGAACGAGAAAATCAACGTGCTGGCGGTGAAC ACTCGCTCGAACAAGGAAGACAACACCGCGCTGATGTCTCTGACCATCGAGATTCCAGGCCTGGACGCGCTGGGGCGCCTGCTGGGGCGGATCTCGCAGT TGCCGAACATCATCGAGACGCGGCGTAATCGTACCCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACCGCGGCGCCTGCTTCGCGGGTAAACCCGCTCCCACAGGTAACGTACAGATTTCAAAACCTGTATCCATCCTGTGGGAGCGGGTTTACCCGCGAAGAA GTCACCGCCGAAGGACCTGCCTACATGACCTACACCCTCGAAGACCTGCTGCACCTCATGGCCCGCCTGCGCGACCCGCAGTATGGTTGCCCATGGGACC TCAAGCAGAACTACGCGACTATCGTCCCCCATACCCTCGAAGAGGCCTACGAGGTCGCCGACACCATCGAGCGCGGTGATTTCGAGCACCTGCAAGGTGA GCTGGGCGACTTGCTGTTCCAGGTGGTCTACTACAGCCAGCTGGCCCGGGAGGAGGGGCGTTTCGAGTTCGATGGCGTGGTTGACAGCATCACCCGCAAG CTGATTCGTCGCCACCCGCATGTATTCCCTACCGGCGAGCTTTATGCGCCGCTGGATACCCCCAGCCTGAGCGAGGCCCAGGTCAAGTCCCGTTGGGAGG
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRVHQPVNTDGSINLEGWLDHVVSVDSALDRAALKDACEFALDVEKKGNPAKHSWADGTSSFQAGLEIAEILADLKLDQDSLVAAVIYRSVREGKVT LAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKGADDEKRLRVAREVFDIYAPLAHRL GIGHIKWELEDLSFRYLEPDQYKQIAKLLHERRLDRERFISDVMNQLQNELLATGVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLVPEVRDC YTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHGMHEEAELGVCAHWRYKGTDVKSGSNHYEEKISWLRQVLEWHEELGDI GGLAEQLRVDIEPDRVYVFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYSLQTGEQVEIITSKHGNPSRDWLNSNLGYVTTSRARA KIVHWFKLQARDQNVAAGKTLLERELSRLGLPQVDFERLADKTNVKTAEDMFAALGAGDLRLAHLVNAAQQLLEPERIEQIELVPRKPSGPRGGKRGDIQ IQGVGNLLTQMAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLAGKEPERMIQVSWGPIPVQTYPVDIVIRAYDRPGLLRDVSQVLLNEKINVLAVN TRSNKEDNTALMSLTIEIPGLDALGRLLGRISQLPNIIETRRNRTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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